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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001815)
Anticodon = TCC
HIT:
19 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.264012 (1 seq.)
>SRA1048564
SRR035094.199164
454 Sequencing (SRP001815)
336
414
+
Gly
TCC
[SRA]
Identical group No.272250 (17 seq.)
>W131157537
AQSK01000158
Unclassified
Cloacimonetes bacterium SCGC AAA252-E13 KSB1 bacterium SCGC AAA252-E13 [AQSK]
349
425
+
Gly
TCC
[ENA]
¡û
>W131157542
AQSK01000158
Unclassified
Cloacimonetes bacterium SCGC AAA252-E13 KSB1 bacterium SCGC AAA252-E13 [AQSK]
25839
25763
-
Gly
TCC
[ENA]
¡û
>W131192921
ASNG01000014
Unclassified
Cloacimonetes bacterium SCGC AAA252-O02 KSB1 bacterium SCGC AAA252-O02 [ASNG]
34344
34268
-
Gly
TCC
[ENA]
¡û
>W131192945
ASNH01000031
Unclassified
Cloacimonetes bacterium SCGC AAA255-C20 KSB1 bacterium SCGC AAA255-C20 [ASNH]
20599
20523
-
Gly
TCC
[ENA]
¡û
>W131192974
ASNI01000012
Unclassified
Cloacimonetes bacterium SCGC AAA252-N17 KSB1 bacterium SCGC AAA252-N17 [ASNI]
320
396
+
Gly
TCC
[ENA]
¡û
>W131193009
ASNJ01000032
Unclassified
Cloacimonetes bacterium SCGC AAA252-N11 KSB1 bacterium SCGC AAA252-N11 [ASNJ]
16045
15969
-
Gly
TCC
[ENA]
¡û
>W131193024
ASNK01000023
Unclassified
Cloacimonetes bacterium SCGC AAA252-E20 KSB1 bacterium SCGC AAA252-E20 [ASNK]
553
629
+
Gly
TCC
[ENA]
¡û
>W131193183
ASNT01000007
Unclassified
Cloacimonetes bacterium SCGC AAA252-P10 KSB1 bacterium SCGC AAA252-P10 [ASNT]
432
508
+
Gly
TCC
[ENA]
¡û
>W141139686
AWNX01000034
Unclassified
Cloacimonetes bacterium JGI OTU-1 [AWNX]
431
507
+
Gly
TCC
[ENA]
¡û
>WENV170624729
FUWD013185793
[FUWD] metagenome; unknown
961
885
-
Gly
TCC
[ENA]
¢þ
>WENV170633009
FUWD013389969
[FUWD] metagenome; unknown
961
885
-
Gly
TCC
[ENA]
¢þ
>SRA1025510
SRR035085.28007
454 Sequencing (SRP001806)
344
268
-
Gly
TCC
[SRA]
>SRA1033959
SRR035088.424048
454 Sequencing (SRP001809)
107
31
-
Gly
TCC
[SRA]
>SRA1035106
SRR035089.238408
454 Sequencing (SRP001810)
300
376
+
Gly
TCC
[SRA]
>SRA1036056
SRR035089.435213
454 Sequencing (SRP001810)
160
84
-
Gly
TCC
[SRA]
>SRA1047717
SRR035094.27413
454 Sequencing (SRP001815)
154
78
-
Gly
TCC
[SRA]
>SRA1047761
SRR035094.36244
454 Sequencing (SRP001815)
154
78
-
Gly
TCC
[SRA]
Identical group No.272257 (7 seq.)
>WENV170600115
FUWD010108391
[FUWD] metagenome; unknown
748
672
-
Gly
TCC
[ENA]
¢þ
>WENV170600155
FUWD010111227
[FUWD] metagenome; unknown
367
291
-
Gly
TCC
[ENA]
¢þ
>WENV170618339
FUWD012963419
[FUWD] metagenome; unknown
668
592
-
Gly
TCC
[ENA]
¢þ
>SRA1019299
SRR035082.431787
454 Sequencing (SRP001803)
272
348
+
Gly
TCC
[SRA]
>SRA1025529
SRR035085.34324
454 Sequencing (SRP001806)
247
323
+
Gly
TCC
[SRA]
>SRA1044839
SRR035092.354917
454 Sequencing (SRP001813)
56
132
+
Gly
TCC
[SRA]
>SRA1048342
SRR035094.151521
454 Sequencing (SRP001815)
377
301
-
Gly
TCC
[SRA]
Identical group No.272491 (11 seq.)
>WENV170603335
FUWD010302736
[FUWD] metagenome; unknown
373
449
+
Gly
TCC
[ENA]
¢þ
>WENV170619085
FUWD012999027
[FUWD] metagenome; unknown
498
574
+
Gly
TCC
[ENA]
¢þ
>WENV170619087
FUWD012999028
[FUWD] metagenome; unknown
56
132
+
Gly
TCC
[ENA]
¢þ
>WENV170699126
LGVF01485599
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
623
699
+
Gly
TCC
[ENA]
¢þ
>SRA1026832
SRR035085.305881
454 Sequencing (SRP001806)
143
217
+
Gly
TCC
[SRA]
>SRA1029552
SRR035087.144754
454 Sequencing (SRP001808)
383
459
+
Gly
TCC
[SRA]
>SRA1029968
SRR035087.209243
454 Sequencing (SRP001808)
35
111
+
Gly
TCC
[SRA]
>SRA1035014
SRR035089.218276
454 Sequencing (SRP001810)
337
413
+
Gly
TCC
[SRA]
>SRA1036296
SRR035089.489780
454 Sequencing (SRP001810)
56
132
+
Gly
TCC
[SRA]
>SRA1047851
SRR035094.54860
454 Sequencing (SRP001815)
118
192
+
Gly
TCC
[SRA]
>SRA1048034
SRR035094.96599
454 Sequencing (SRP001815)
118
192
+
Gly
TCC
[SRA]
Identical group No.272707 (6 seq.)
>WENV183802841
PVBE010791798
[PVBE] marine metagenome; water
156
80
-
Gly
TCC
[ENA]
¢þ
>WENV170457706
CEVA01502788
[CEVA] marine metagenome genome assembly TARA_125_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1374
1450
+
Gly
TCC
[ENA]
¢þ
>WENV170520290
CEWE01444933
[CEWE] marine metagenome genome assembly TARA_124_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
387
311
-
Gly
TCC
[ENA]
¢þ
>C181118903
CP025544
Unclassified
Candidatus Chromulinivorax destructor SeV1 [CP025544]
394858
394782
-
Gly
TCC
-
¡û
>SRA1035239
SRR035089.267225
454 Sequencing (SRP001810)
369
293
-
Gly
TCC
[SRA]
>SRA1048719
SRR035094.234325
454 Sequencing (SRP001815)
336
412
+
Gly
TCC
[SRA]
Identical group No.415531 (1 seq.)
>SRA1047916
SRR035094.67466
454 Sequencing (SRP001815)
81
157
+
Gly
TCC
[SRA]
Identical group No.453224 (5 seq.)
>WENV170611627
FUWD012361975
[FUWD] metagenome; unknown
192
119
-
Gly
TCC
[ENA]
¢þ
>SRA1018701
SRR035082.334753
454 Sequencing (SRP001803)
192
119
-
Gly
TCC
[SRA]
>SRA1025542
SRR035085.36027
454 Sequencing (SRP001806)
296
369
+
Gly
TCC
[SRA]
>SRA1026128
SRR035085.148570
454 Sequencing (SRP001806)
296
369
+
Gly
TCC
[SRA]
>SRA1048774
SRR035094.245628
454 Sequencing (SRP001815)
111
184
+
Gly
TCC
[SRA]
Identical group No.453555 (4 seq.)
>WENV170619952
FUWD013023525
[FUWD] metagenome; unknown
79
154
+
Gly
TCC
[ENA]
¢þ
>WENV170628079
FUWD013241589
[FUWD] metagenome; unknown
79
154
+
Gly
TCC
[ENA]
¢þ
>SRA1034623
SRR035089.138934
454 Sequencing (SRP001810)
40
115
+
Gly
TCC
[SRA]
>SRA1048036
SRR035094.96608
454 Sequencing (SRP001815)
89
164
+
Gly
TCC
[SRA]
Identical group No.484182 (7 seq.)
>WENV170600334
FUWD010120684
[FUWD] metagenome; unknown
273
346
+
Gly
TCC
[ENA]
¢þ
>WENV170626946
FUWD013230497
[FUWD] metagenome; unknown
8967
9040
+
Gly
TCC
[ENA]
¢þ
>SRA1017526
SRR035082.155576
454 Sequencing (SRP001803)
7
80
+
Gly
TCC
[SRA]
>SRA1018260
SRR035082.264876
454 Sequencing (SRP001803)
128
201
+
Gly
TCC
[SRA]
>SRA1029667
SRR035087.160696
454 Sequencing (SRP001808)
274
347
+
Gly
TCC
[SRA]
>SRA1042812
SRR035091.450219
454 Sequencing (SRP001812)
544
468
-
Gly
TCC
[SRA]
>SRA1048546
SRR035094.197100
454 Sequencing (SRP001815)
116
189
+
Gly
TCC
[SRA]
Identical group No.486499 (4 seq.)
>W1711392673
MENU01000209
Bacteroidota
Bacteroidetes bacterium GWE2_29_8 [MENU]
3940
3867
-
Gly
TCC
[ENA]
¡û
>W1711392985
MEOD01000008
Bacteroidota
Bacteroidetes bacterium GWF2_29_10 [MEOD]
5101
5028
-
Gly
TCC
[ENA]
¡û
>WENV170612088
FUWD012500929
[FUWD] metagenome; unknown
182
255
+
Gly
TCC
[ENA]
¢þ
>SRA1048091
SRR035094.107120
454 Sequencing (SRP001815)
164
237
+
Gly
TCC
[SRA]
Identical group No.612523 (1 seq.)
>SRA1047841
SRR035094.51832
454 Sequencing (SRP001815)
351
278
-
Gly
TCC
[SRA]
Identical group No.612526 (1 seq.)
>SRA1047890
SRR035094.62868
454 Sequencing (SRP001815)
69
142
+
Gly
TCC
[SRA]
Identical group No.654428 (13 seq.)
>WENV170220459
CEPZ01169295
[CEPZ] marine metagenome genome assembly TARA_039_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
222
149
-
Gly
TCC
[ENA]
¢þ
>WENV170617861
FUWD012940152
[FUWD] metagenome; unknown
607
536
-
Gly
TCC
[ENA]
¢þ
>WENV170617864
FUWD012940153
[FUWD] metagenome; unknown
358
287
-
Gly
TCC
[ENA]
¢þ
>SRA1030581
SRR035087.299819
454 Sequencing (SRP001808)
259
188
-
Gly
TCC
[SRA]
>SRA1034273
SRR035089.44086
454 Sequencing (SRP001810)
18
89
+
Gly
TCC
[SRA]
>SRA1041707
SRR035091.280525
454 Sequencing (SRP001812)
262
333
+
Gly
TCC
[SRA]
>SRA1041846
SRR035091.304041
454 Sequencing (SRP001812)
142
213
+
Gly
TCC
[SRA]
>SRA1043139
SRR035092.56687
454 Sequencing (SRP001813)
186
257
+
Gly
TCC
[SRA]
>SRA1047942
SRR035094.72171
454 Sequencing (SRP001815)
74
145
+
Gly
TCC
[SRA]
>SRA1049048
SRR035095.6838
454 Sequencing (SRP001816)
201
130
-
Gly
TCC
[SRA]
>SRA1049072
SRR035095.14260
454 Sequencing (SRP001816)
202
131
-
Gly
TCC
[SRA]
>SRA1049496
SRR035095.86638
454 Sequencing (SRP001816)
89
160
+
Gly
TCC
[SRA]
>SRA1050082
SRR035095.188450
454 Sequencing (SRP001816)
354
283
-
Gly
TCC
[SRA]
Identical group No.710825 (6 seq.)
>WENV170608181
FUWD010899472
[FUWD] metagenome; unknown
175
101
-
Gly
TCC
[ENA]
¢þ
>SRA1017008
SRR035082.68333
454 Sequencing (SRP001803)
213
139
-
Gly
TCC
[SRA]
>SRA1019712
SRR035082.509617
454 Sequencing (SRP001803)
273
199
-
Gly
TCC
[SRA]
>SRA1044155
SRR035092.232481
454 Sequencing (SRP001813)
132
206
+
Gly
TCC
[SRA]
>SRA1044413
SRR035092.275480
454 Sequencing (SRP001813)
175
101
-
Gly
TCC
[SRA]
>SRA1047730
SRR035094.31198
454 Sequencing (SRP001815)
328
402
+
Gly
TCC
[SRA]
Identical group No.711449 (6 seq.)
>WENV170623396
FUWD013149661
[FUWD] metagenome; unknown
257
185
-
Gly
TCC
[ENA]
¢þ
>WENV170631666
FUWD013360771
[FUWD] metagenome; unknown
257
185
-
Gly
TCC
[ENA]
¢þ
>SRA1017985
SRR035082.224779
454 Sequencing (SRP001803)
257
185
-
Gly
TCC
[SRA]
>SRA1043176
SRR035092.64457
454 Sequencing (SRP001813)
227
299
+
Gly
TCC
[SRA]
>SRA1043969
SRR035092.203380
454 Sequencing (SRP001813)
179
107
-
Gly
TCC
[SRA]
>SRA1048759
SRR035094.242285
454 Sequencing (SRP001815)
185
257
+
Gly
TCC
[SRA]
Identical group No.779895 (5 seq.)
>WENV170608210
FUWD010902581
[FUWD] metagenome; unknown
97
24
-
Gly
TCC
[ENA]
¢þ
>SRA1016831
SRR035082.38440
454 Sequencing (SRP001803)
344
271
-
Gly
TCC
[SRA]
>SRA1035118
SRR035089.241188
454 Sequencing (SRP001810)
335
262
-
Gly
TCC
[SRA]
>SRA1035604
SRR035089.338787
454 Sequencing (SRP001810)
336
263
-
Gly
TCC
[SRA]
>SRA1048123
SRR035094.112985
454 Sequencing (SRP001815)
107
34
-
Gly
TCC
[SRA]
Identical group No.779960 (7 seq.)
>WENV170620848
FUWD013041188
[FUWD] metagenome; unknown
1603
1530
-
Gly
TCC
[ENA]
¢þ
>WENV170629001
FUWD013258259
[FUWD] metagenome; unknown
1603
1530
-
Gly
TCC
[ENA]
¢þ
>SRA1032902
SRR035088.126286
454 Sequencing (SRP001809)
81
154
+
Gly
TCC
[SRA]
>SRA1033986
SRR035088.433425
454 Sequencing (SRP001809)
138
65
-
Gly
TCC
[SRA]
>SRA1036262
SRR035089.482447
454 Sequencing (SRP001810)
102
29
-
Gly
TCC
[SRA]
>SRA1040727
SRR035091.138181
454 Sequencing (SRP001812)
237
164
-
Gly
TCC
[SRA]
>SRA1047974
SRR035094.79595
454 Sequencing (SRP001815)
344
417
+
Gly
TCC
[SRA]
Identical group No.805102 (5 seq.)
>WENV170607949
FUWD010873830
[FUWD] metagenome; unknown
1
71
+
Gly
TCC
[ENA]
¢þ
>WENV170613316
FUWD012795014
[FUWD] metagenome; unknown
155
85
-
Gly
TCC
[ENA]
¢þ
>SRA1042469
SRR035091.392104
454 Sequencing (SRP001812)
211
281
+
Gly
TCC
[SRA]
>SRA1047879
SRR035094.60148
454 Sequencing (SRP001815)
241
311
+
Gly
TCC
[SRA]
>SRA1047931
SRR035094.69912
454 Sequencing (SRP001815)
241
311
+
Gly
TCC
[SRA]
Identical group No.805294 (3 seq.)
>WENV170612760
FUWD012682631
[FUWD] metagenome; unknown
197
124
-
Gly
TCC
[ENA]
¢þ
>SRA1048144
SRR035094.116009
454 Sequencing (SRP001815)
207
134
-
Gly
TCC
[SRA]
>SRA1048820
SRR035094.256393
454 Sequencing (SRP001815)
207
134
-
Gly
TCC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK