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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001817)
Anticodon = CCA
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.484728 (7 seq.)
>WENV170599530
FUWD010078632
[FUWD] metagenome; unknown
630
705
+
Trp
CCA
[ENA]
¢þ
>SRA1047019
SRR035093.437026
454 Sequencing (SRP001814)
340
415
+
Trp
CCA
[SRA]
>SRA1050913
SRR035096.51652
454 Sequencing (SRP001817)
273
348
+
Trp
CCA
[SRA]
>SRA1052295
SRR035098.176783
454 Sequencing (SRP001819)
166
91
-
Trp
CCA
[SRA]
>SRA1053288
SRR035098.375033
454 Sequencing (SRP001819)
167
92
-
Trp
CCA
[SRA]
>SRA1053826
SRR035098.506246
454 Sequencing (SRP001819)
167
92
-
Trp
CCA
[SRA]
>SRA1053882
SRR035098.524141
454 Sequencing (SRP001819)
166
91
-
Trp
CCA
[SRA]
Identical group No.654300 (39 seq.)
>WENV180369248
OBOG01056932
[OBOG] marine metagenome; seawater
131
205
+
Trp
CCA
[ENA]
¢þ
>WENV180590055
OCOS01091815
[OCOS] marine metagenome; Sterile flask
261
334
+
Trp
CCA
[ENA]
¢þ
>WENV170424659
CEUP01002322
[CEUP] marine metagenome genome assembly TARA_123_MIX_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
250
179
-
Trp
CCA
[ENA]
¢þ
>WENV170599587
FUWD010081048
[FUWD] metagenome; unknown
74
1
-
Trp
CCA
[ENA]
¢þ
>WENV170603317
FUWD010301176
[FUWD] metagenome; unknown
10
81
+
Trp
CCA
[ENA]
¢þ
>WENV170617460
FUWD012926983
[FUWD] metagenome; unknown
1786
1713
-
Trp
CCA
[ENA]
¢þ
>WENV170617462
FUWD012926983
[FUWD] metagenome; unknown
1079
1006
-
Trp
CCA
[ENA]
¢þ
>SRA1025950
SRR035085.115332
454 Sequencing (SRP001806)
312
239
-
Trp
CCA
[SRA]
>SRA1026839
SRR035086.3237
454 Sequencing (SRP001807)
124
51
-
Trp
CCA
[SRA]
>SRA1026857
SRR035086.11798
454 Sequencing (SRP001807)
319
246
-
Trp
CCA
[SRA]
>SRA1026885
SRR035086.21139
454 Sequencing (SRP001807)
166
239
+
Trp
CCA
[SRA]
>SRA1026896
SRR035086.23977
454 Sequencing (SRP001807)
127
54
-
Trp
CCA
[SRA]
>SRA1026910
SRR035086.26464
454 Sequencing (SRP001807)
215
142
-
Trp
CCA
[SRA]
>SRA1026950
SRR035086.31765
454 Sequencing (SRP001807)
61
134
+
Trp
CCA
[SRA]
>SRA1026964
SRR035086.34605
454 Sequencing (SRP001807)
61
134
+
Trp
CCA
[SRA]
>SRA1027010
SRR035086.43546
454 Sequencing (SRP001807)
116
43
-
Trp
CCA
[SRA]
>SRA1027077
SRR035086.58129
454 Sequencing (SRP001807)
179
252
+
Trp
CCA
[SRA]
>SRA1027138
SRR035086.69742
454 Sequencing (SRP001807)
477
404
-
Trp
CCA
[SRA]
>SRA1027149
SRR035086.71966
454 Sequencing (SRP001807)
217
144
-
Trp
CCA
[SRA]
>SRA1027161
SRR035086.72859
454 Sequencing (SRP001807)
218
145
-
Trp
CCA
[SRA]
>SRA1027425
SRR035086.122732
454 Sequencing (SRP001807)
244
171
-
Trp
CCA
[SRA]
>SRA1027472
SRR035086.130138
454 Sequencing (SRP001807)
180
253
+
Trp
CCA
[SRA]
>SRA1027526
SRR035086.141314
454 Sequencing (SRP001807)
238
165
-
Trp
CCA
[SRA]
>SRA1027628
SRR035086.162934
454 Sequencing (SRP001807)
241
168
-
Trp
CCA
[SRA]
>SRA1027632
SRR035086.164044
454 Sequencing (SRP001807)
32
103
+
Trp
CCA
[SRA]
>SRA1027679
SRR035086.170638
454 Sequencing (SRP001807)
304
377
+
Trp
CCA
[SRA]
>SRA1027697
SRR035086.176151
454 Sequencing (SRP001807)
247
320
+
Trp
CCA
[SRA]
>SRA1027855
SRR035086.207036
454 Sequencing (SRP001807)
220
293
+
Trp
CCA
[SRA]
>SRA1028176
SRR035086.270372
454 Sequencing (SRP001807)
371
298
-
Trp
CCA
[SRA]
>SRA1028249
SRR035086.283687
454 Sequencing (SRP001807)
462
535
+
Trp
CCA
[SRA]
>SRA1028459
SRR035086.331440
454 Sequencing (SRP001807)
296
369
+
Trp
CCA
[SRA]
>SRA1028540
SRR035086.353196
454 Sequencing (SRP001807)
116
189
+
Trp
CCA
[SRA]
>SRA1028582
SRR035086.366186
454 Sequencing (SRP001807)
43
114
+
Trp
CCA
[SRA]
>SRA1050777
SRR035096.19409
454 Sequencing (SRP001817)
97
26
-
Trp
CCA
[SRA]
>SRA1050838
SRR035096.29798
454 Sequencing (SRP001817)
289
216
-
Trp
CCA
[SRA]
>SRA1051063
SRR035096.78210
454 Sequencing (SRP001817)
452
379
-
Trp
CCA
[SRA]
>SRA1051184
SRR035096.103715
454 Sequencing (SRP001817)
528
457
-
Trp
CCA
[SRA]
>SRA1051374
SRR035096.160316
454 Sequencing (SRP001817)
405
332
-
Trp
CCA
[SRA]
>SRA1051439
SRR035096.182944
454 Sequencing (SRP001817)
383
312
-
Trp
CCA
[SRA]
Identical group No.672736 (10 seq.)
>WENV170617370
FUWD012923706
[FUWD] metagenome; unknown
313
239
-
Trp
CCA
[ENA]
¢þ
>WENV170617376
FUWD012923707
[FUWD] metagenome; unknown
169
95
-
Trp
CCA
[ENA]
¢þ
>SRA1028274
SRR035086.289186
454 Sequencing (SRP001807)
306
232
-
Trp
CCA
[SRA]
>SRA1046425
SRR035093.304199
454 Sequencing (SRP001814)
116
42
-
Trp
CCA
[SRA]
>SRA1046839
SRR035093.396032
454 Sequencing (SRP001814)
336
410
+
Trp
CCA
[SRA]
>SRA1050762
SRR035096.17586
454 Sequencing (SRP001817)
449
523
+
Trp
CCA
[SRA]
>SRA1051572
SRR035098.32254
454 Sequencing (SRP001819)
49
123
+
Trp
CCA
[SRA]
>SRA1051638
SRR035098.45031
454 Sequencing (SRP001819)
98
24
-
Trp
CCA
[SRA]
>SRA1052289
SRR035098.175372
454 Sequencing (SRP001819)
113
39
-
Trp
CCA
[SRA]
>SRA1053643
SRR035098.459158
454 Sequencing (SRP001819)
144
70
-
Trp
CCA
[SRA]
Identical group No.711136 (3 seq.)
>WENV170612855
FUWD012706282
[FUWD] metagenome; unknown
11
82
+
Trp
CCA
[ENA]
¢þ
>SRA1050948
SRR035096.57311
454 Sequencing (SRP001817)
135
206
+
Trp
CCA
[SRA]
>SRA1050967
SRR035096.62430
454 Sequencing (SRP001817)
135
206
+
Trp
CCA
[SRA]
Identical group No.756611 (1 seq.)
>SRA1051032
SRR035096.73599
454 Sequencing (SRP001817)
72
145
+
Trp
CCA
[SRA]
Identical group No.805371 (4 seq.)
>WENV170619813
FUWD013021624
[FUWD] metagenome; unknown
996
923
-
Trp
CCA
[ENA]
¢þ
>WENV170627933
FUWD013239836
[FUWD] metagenome; unknown
996
923
-
Trp
CCA
[ENA]
¢þ
>SRA1024679
SRR035084.374668
454 Sequencing (SRP001805)
355
282
-
Trp
CCA
[SRA]
>SRA1050994
SRR035096.67236
454 Sequencing (SRP001817)
151
224
+
Trp
CCA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK