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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
454 Sequencing (SRP001820)
Anticodon = GTA
HIT:
13 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.123091 (1 seq.)
>SRA1054651
SRR035099.181905
454 Sequencing (SRP001820)
322
236
-
Tyr
GTA
[SRA]
Identical group No.123094 (1 seq.)
>SRA1054770
SRR035099.208826
454 Sequencing (SRP001820)
166
250
+
Tyr
GTA
[SRA]
Identical group No.153860 (75 seq.)
>WENV170613993
FUWD012823312
[FUWD] metagenome; unknown
14589
14674
+
Tyr
GTA
[ENA]
¢þ
>SRA1017489
SRR035082.148445
454 Sequencing (SRP001803)
141
56
-
Tyr
GTA
[SRA]
>SRA1019126
SRR035082.406202
454 Sequencing (SRP001803)
95
10
-
Tyr
GTA
[SRA]
>SRA1019876
SRR035083.10803
454 Sequencing (SRP001804)
247
162
-
Tyr
GTA
[SRA]
>SRA1019903
SRR035083.18618
454 Sequencing (SRP001804)
224
139
-
Tyr
GTA
[SRA]
>SRA1020090
SRR035083.56609
454 Sequencing (SRP001804)
114
199
+
Tyr
GTA
[SRA]
>SRA1020107
SRR035083.58046
454 Sequencing (SRP001804)
169
84
-
Tyr
GTA
[SRA]
>SRA1020358
SRR035083.101598
454 Sequencing (SRP001804)
249
164
-
Tyr
GTA
[SRA]
>SRA1020409
SRR035083.110863
454 Sequencing (SRP001804)
247
162
-
Tyr
GTA
[SRA]
>SRA1020768
SRR035083.162002
454 Sequencing (SRP001804)
167
82
-
Tyr
GTA
[SRA]
>SRA1020769
SRR035083.162038
454 Sequencing (SRP001804)
31
116
+
Tyr
GTA
[SRA]
>SRA1020916
SRR035083.184374
454 Sequencing (SRP001804)
460
543
+
Tyr
GTA
[SRA]
>SRA1021041
SRR035083.202516
454 Sequencing (SRP001804)
188
103
-
Tyr
GTA
[SRA]
>SRA1021530
SRR035083.269832
454 Sequencing (SRP001804)
244
329
+
Tyr
GTA
[SRA]
>SRA1021576
SRR035083.275398
454 Sequencing (SRP001804)
14
99
+
Tyr
GTA
[SRA]
>SRA1021731
SRR035083.298522
454 Sequencing (SRP001804)
334
419
+
Tyr
GTA
[SRA]
>SRA1022124
SRR035083.356142
454 Sequencing (SRP001804)
104
19
-
Tyr
GTA
[SRA]
>SRA1022315
SRR035083.387277
454 Sequencing (SRP001804)
120
35
-
Tyr
GTA
[SRA]
>SRA1022445
SRR035083.406043
454 Sequencing (SRP001804)
224
309
+
Tyr
GTA
[SRA]
>SRA1022483
SRR035083.412217
454 Sequencing (SRP001804)
45
130
+
Tyr
GTA
[SRA]
>SRA1022786
SRR035083.459930
454 Sequencing (SRP001804)
409
324
-
Tyr
GTA
[SRA]
>SRA1026320
SRR035085.185260
454 Sequencing (SRP001806)
345
260
-
Tyr
GTA
[SRA]
>SRA1028806
SRR035087.12237
454 Sequencing (SRP001808)
142
227
+
Tyr
GTA
[SRA]
>SRA1029074
SRR035087.69287
454 Sequencing (SRP001808)
131
216
+
Tyr
GTA
[SRA]
>SRA1029251
SRR035087.98062
454 Sequencing (SRP001808)
81
166
+
Tyr
GTA
[SRA]
>SRA1032625
SRR035088.66700
454 Sequencing (SRP001809)
55
140
+
Tyr
GTA
[SRA]
>SRA1032720
SRR035088.86779
454 Sequencing (SRP001809)
207
122
-
Tyr
GTA
[SRA]
>SRA1032862
SRR035088.118389
454 Sequencing (SRP001809)
1
86
+
Tyr
GTA
[SRA]
>SRA1032881
SRR035088.121271
454 Sequencing (SRP001809)
79
164
+
Tyr
GTA
[SRA]
>SRA1033009
SRR035088.151199
454 Sequencing (SRP001809)
262
177
-
Tyr
GTA
[SRA]
>SRA1033433
SRR035088.256733
454 Sequencing (SRP001809)
142
227
+
Tyr
GTA
[SRA]
>SRA1034203
SRR035089.22523
454 Sequencing (SRP001810)
13
98
+
Tyr
GTA
[SRA]
>SRA1035266
SRR035089.270799
454 Sequencing (SRP001810)
91
6
-
Tyr
GTA
[SRA]
>SRA1036339
SRR035089.498190
454 Sequencing (SRP001810)
189
274
+
Tyr
GTA
[SRA]
>SRA1036876
SRR035090.30685
454 Sequencing (SRP001811)
13
98
+
Tyr
GTA
[SRA]
>SRA1036929
SRR035090.40403
454 Sequencing (SRP001811)
271
356
+
Tyr
GTA
[SRA]
>SRA1036951
SRR035090.44248
454 Sequencing (SRP001811)
99
14
-
Tyr
GTA
[SRA]
>SRA1036974
SRR035090.49611
454 Sequencing (SRP001811)
98
13
-
Tyr
GTA
[SRA]
>SRA1037011
SRR035090.58581
454 Sequencing (SRP001811)
230
315
+
Tyr
GTA
[SRA]
>SRA1037066
SRR035090.69197
454 Sequencing (SRP001811)
13
98
+
Tyr
GTA
[SRA]
>SRA1037332
SRR035090.117969
454 Sequencing (SRP001811)
36
121
+
Tyr
GTA
[SRA]
>SRA1037555
SRR035090.153420
454 Sequencing (SRP001811)
205
290
+
Tyr
GTA
[SRA]
>SRA1037573
SRR035090.157200
454 Sequencing (SRP001811)
173
88
-
Tyr
GTA
[SRA]
>SRA1037767
SRR035090.191656
454 Sequencing (SRP001811)
374
459
+
Tyr
GTA
[SRA]
>SRA1037962
SRR035090.226922
454 Sequencing (SRP001811)
173
88
-
Tyr
GTA
[SRA]
>SRA1038088
SRR035090.243541
454 Sequencing (SRP001811)
232
317
+
Tyr
GTA
[SRA]
>SRA1038149
SRR035090.254382
454 Sequencing (SRP001811)
25
110
+
Tyr
GTA
[SRA]
>SRA1038443
SRR035090.305700
454 Sequencing (SRP001811)
25
110
+
Tyr
GTA
[SRA]
>SRA1038850
SRR035090.379507
454 Sequencing (SRP001811)
152
67
-
Tyr
GTA
[SRA]
>SRA1038968
SRR035090.401944
454 Sequencing (SRP001811)
147
62
-
Tyr
GTA
[SRA]
>SRA1039072
SRR035090.419604
454 Sequencing (SRP001811)
25
110
+
Tyr
GTA
[SRA]
>SRA1039227
SRR035090.446979
454 Sequencing (SRP001811)
133
48
-
Tyr
GTA
[SRA]
>SRA1039500
SRR035090.504205
454 Sequencing (SRP001811)
377
462
+
Tyr
GTA
[SRA]
>SRA1039533
SRR035090.509368
454 Sequencing (SRP001811)
210
125
-
Tyr
GTA
[SRA]
>SRA1039719
SRR035090.553612
454 Sequencing (SRP001811)
287
372
+
Tyr
GTA
[SRA]
>SRA1039889
SRR035090.593658
454 Sequencing (SRP001811)
25
110
+
Tyr
GTA
[SRA]
>SRA1045891
SRR035093.190883
454 Sequencing (SRP001814)
141
56
-
Tyr
GTA
[SRA]
>SRA1046201
SRR035093.253138
454 Sequencing (SRP001814)
136
221
+
Tyr
GTA
[SRA]
>SRA1046637
SRR035093.349835
454 Sequencing (SRP001814)
135
50
-
Tyr
GTA
[SRA]
>SRA1053338
SRR035098.386680
454 Sequencing (SRP001819)
143
58
-
Tyr
GTA
[SRA]
>SRA1054033
SRR035099.38386
454 Sequencing (SRP001820)
424
339
-
Tyr
GTA
[SRA]
>SRA1054079
SRR035099.52193
454 Sequencing (SRP001820)
175
90
-
Tyr
GTA
[SRA]
>SRA1054175
SRR035099.76427
454 Sequencing (SRP001820)
374
289
-
Tyr
GTA
[SRA]
>SRA1054256
SRR035099.93112
454 Sequencing (SRP001820)
156
71
-
Tyr
GTA
[SRA]
>SRA1054358
SRR035099.115116
454 Sequencing (SRP001820)
156
241
+
Tyr
GTA
[SRA]
>SRA1054375
SRR035099.118584
454 Sequencing (SRP001820)
271
186
-
Tyr
GTA
[SRA]
>SRA1054563
SRR035099.164290
454 Sequencing (SRP001820)
215
300
+
Tyr
GTA
[SRA]
>SRA1054591
SRR035099.169747
454 Sequencing (SRP001820)
364
279
-
Tyr
GTA
[SRA]
>SRA1054609
SRR035099.172210
454 Sequencing (SRP001820)
231
146
-
Tyr
GTA
[SRA]
>SRA1054649
SRR035099.181707
454 Sequencing (SRP001820)
186
271
+
Tyr
GTA
[SRA]
>SRA1054684
SRR035099.188520
454 Sequencing (SRP001820)
156
241
+
Tyr
GTA
[SRA]
>SRA1054699
SRR035099.190338
454 Sequencing (SRP001820)
237
152
-
Tyr
GTA
[SRA]
>SRA1054746
SRR035099.205446
454 Sequencing (SRP001820)
534
449
-
Tyr
GTA
[SRA]
>SRA1054759
SRR035099.207667
454 Sequencing (SRP001820)
286
371
+
Tyr
GTA
[SRA]
>SRA1054844
SRR035099.228704
454 Sequencing (SRP001820)
296
211
-
Tyr
GTA
[SRA]
Identical group No.160436 (7 seq.)
>WENV170622012
FUWD013084115
[FUWD] metagenome; unknown
303
387
+
Tyr
GTA
[ENA]
¢þ
>WENV170630215
FUWD013299283
[FUWD] metagenome; unknown
303
387
+
Tyr
GTA
[ENA]
¢þ
>SRA1053939
SRR035099.9309
454 Sequencing (SRP001820)
134
50
-
Tyr
GTA
[SRA]
>SRA1054038
SRR035099.40062
454 Sequencing (SRP001820)
294
210
-
Tyr
GTA
[SRA]
>SRA1054190
SRR035099.80937
454 Sequencing (SRP001820)
21
105
+
Tyr
GTA
[SRA]
>SRA1054480
SRR035099.141557
454 Sequencing (SRP001820)
295
211
-
Tyr
GTA
[SRA]
>SRA1054860
SRR035099.236588
454 Sequencing (SRP001820)
126
42
-
Tyr
GTA
[SRA]
Identical group No.160439 (1 seq.)
>SRA1054215
SRR035099.85733
454 Sequencing (SRP001820)
204
287
+
Tyr
GTA
[SRA]
Identical group No.160445 (1 seq.)
>SRA1054658
SRR035099.182850
454 Sequencing (SRP001820)
424
339
-
Tyr
GTA
[SRA]
Identical group No.160446 (1 seq.)
>SRA1054729
SRR035099.199180
454 Sequencing (SRP001820)
288
373
+
Tyr
GTA
[SRA]
Identical group No.160449 (1 seq.)
>SRA1054841
SRR035099.228310
454 Sequencing (SRP001820)
120
203
+
Tyr
GTA
[SRA]
Identical group No.180204 (50 seq.)
>WENV180367597
OBOE01164764
[OBOE] marine metagenome; ENVO:00002010
45
129
+
Tyr
GTA
[ENA]
¢þ
>WENV182540486
OJAJ01003472
[OJAJ] seawater metagenome; Sea water
880
798
-
Tyr
GTA
[ENA]
¢þ
>WENV182540873
OJAQ01000212
[OJAQ] seawater metagenome; Sea water
7180
7262
+
Tyr
GTA
[ENA]
¢þ
>WENV182542735
OJAZ01001362
[OJAZ] seawater metagenome; Sea water
6463
6545
+
Tyr
GTA
[ENA]
¢þ
>WENV182544250
OJBF01000272
[OJBF] seawater metagenome; Sea water
942
1024
+
Tyr
GTA
[ENA]
¢þ
>WENV182544447
OJBG01002046
[OJBG] seawater metagenome; Sea water
1026
1108
+
Tyr
GTA
[ENA]
¢þ
>WENV182545842
OJBN01035303
[OJBN] seawater metagenome; Sea water
438
520
+
Tyr
GTA
[ENA]
¢þ
>WENV182550117
OJBZ01003861
[OJBZ] seawater metagenome; Sea water
2357
2439
+
Tyr
GTA
[ENA]
¢þ
>WENV182553179
OJCR01000294
[OJCR] seawater metagenome; Sea water
20673
20755
+
Tyr
GTA
[ENA]
¢þ
>WENV182554208
OJCT01016080
[OJCT] seawater metagenome; Sea water
561
643
+
Tyr
GTA
[ENA]
¢þ
>WENV182557136
OJDI01001261
[OJDI] seawater metagenome; Sea water
638
556
-
Tyr
GTA
[ENA]
¢þ
>WENV182561575
OJDX01000007
[OJDX] seawater metagenome; Sea water
3931
3849
-
Tyr
GTA
[ENA]
¢þ
>WENV182561912
OJDY01000007
[OJDY] seawater metagenome; Sea water
52459
52541
+
Tyr
GTA
[ENA]
¢þ
>WENV182562648
OJEA01000008
[OJEA] seawater metagenome; Sea water
5339
5257
-
Tyr
GTA
[ENA]
¢þ
>WENV182563083
OJEB01000112
[OJEB] seawater metagenome; Sea water
5537
5455
-
Tyr
GTA
[ENA]
¢þ
>WENV182564045
OJEE01000011
[OJEE] seawater metagenome; Sea water
5120
5038
-
Tyr
GTA
[ENA]
¢þ
>WENV182569003
OJEY01000013
[OJEY] seawater metagenome; Sea water
3931
3849
-
Tyr
GTA
[ENA]
¢þ
>WENV182569776
OJFB01000487
[OJFB] seawater metagenome; Sea water
5912
5994
+
Tyr
GTA
[ENA]
¢þ
>WENV182574699
OJFS01000522
[OJFS] seawater metagenome; Sea water
7217
7135
-
Tyr
GTA
[ENA]
¢þ
>WENV182576518
OJFX01048528
[OJFX] seawater metagenome; Sea water
458
376
-
Tyr
GTA
[ENA]
¢þ
>WENV182576572
OJFY01000176
[OJFY] seawater metagenome; Sea water
7121
7203
+
Tyr
GTA
[ENA]
¢þ
>WENV182577968
OJGM01000131
[OJGM] seawater metagenome; Sea water
5337
5255
-
Tyr
GTA
[ENA]
¢þ
>WENV182582102
OJHA01000021
[OJHA] seawater metagenome; Sea water
26237
26319
+
Tyr
GTA
[ENA]
¢þ
>WENV182582420
OJHB01000084
[OJHB] seawater metagenome; Sea water
15602
15684
+
Tyr
GTA
[ENA]
¢þ
>WENV182583198
OJHD01001131
[OJHD] seawater metagenome; Sea water
4463
4381
-
Tyr
GTA
[ENA]
¢þ
>WENV182587581
OJHN01000151
[OJHN] seawater metagenome; Sea water
7159
7241
+
Tyr
GTA
[ENA]
¢þ
>WENV182592425
OJIR01000553
[OJIR] seawater metagenome; Sea water
7133
7215
+
Tyr
GTA
[ENA]
¢þ
>WENV183053689
OLGP01002395
[OLGP] seawater metagenome; Sea water
747
665
-
Tyr
GTA
[ENA]
¢þ
>WENV183054515
OLGU01000015
[OLGU] seawater metagenome; Sea water
50433
50515
+
Tyr
GTA
[ENA]
¢þ
>WENV183059072
OLHS01002765
[OLHS] seawater metagenome; Sea water
907
825
-
Tyr
GTA
[ENA]
¢þ
>WENV183059261
OLHU01000155
[OLHU] seawater metagenome; Sea water
5321
5239
-
Tyr
GTA
[ENA]
¢þ
>WENV183060216
OLHX01000137
[OLHX] seawater metagenome; Sea water
4343
4261
-
Tyr
GTA
[ENA]
¢þ
>WENV183061053
OLHY01035196
[OLHY] seawater metagenome; Sea water
193
275
+
Tyr
GTA
[ENA]
¢þ
>WENV170568894
FLMP01093719
[FLMP] seawater metagenome; seawater
603
519
-
Tyr
GTA
[ENA]
¢þ
>WENV170570749
FLOH01000020
[FLOH] marine metagenome; water
490199
490115
-
Tyr
GTA
[ENA]
¢þ
>WENV170572804
FLOH01001317
[FLOH] marine metagenome; water
37
121
+
Tyr
GTA
[ENA]
¢þ
>WENV170626929
FUWD013230130
[FUWD] metagenome; unknown
15996
16078
+
Tyr
GTA
[ENA]
¢þ
>WENV170627401
FUWD013232677
[FUWD] metagenome; unknown
28334
28418
+
Tyr
GTA
[ENA]
¢þ
>WENV170627514
FUWD013233003
[FUWD] metagenome; unknown
20298
20382
+
Tyr
GTA
[ENA]
¢þ
>WENV170950388
MEHZ011494181
[MEHZ] marine metagenome; marine surface water
3476
3560
+
Tyr
GTA
[ENA]
¢þ
>SRA1019605
SRR035082.486608
454 Sequencing (SRP001803)
383
299
-
Tyr
GTA
[SRA]
>SRA1026257
SRR035085.173317
454 Sequencing (SRP001806)
319
237
-
Tyr
GTA
[SRA]
>SRA1035875
SRR035089.393154
454 Sequencing (SRP001810)
307
223
-
Tyr
GTA
[SRA]
>SRA1051048
SRR035096.75292
454 Sequencing (SRP001817)
156
238
+
Tyr
GTA
[SRA]
>SRA1052212
SRR035098.160984
454 Sequencing (SRP001819)
133
49
-
Tyr
GTA
[SRA]
>SRA1052341
SRR035098.184359
454 Sequencing (SRP001819)
151
69
-
Tyr
GTA
[SRA]
>SRA1053909
SRR035098.533194
454 Sequencing (SRP001819)
203
287
+
Tyr
GTA
[SRA]
>SRA1053974
SRR035099.21773
454 Sequencing (SRP001820)
153
69
-
Tyr
GTA
[SRA]
>W1610625688
LIAY01000139
Actinomycetota
Microbacteriaceae bacterium BACL25 MAG-120322-bin65 [LIAY]
2385
2301
-
Tyr
GTA
[ENA]
¡û
>W1710756815
LIAY01000139
Actinomycetota
Microbacteriaceae bacterium BACL25 MAG-120322-bin65 [LIAY]
2385
2301
-
Tyr
GTA
[ENA]
¡û
Identical group No.186066 (9 seq.)
>WENV170603299
FUWD010299550
[FUWD] metagenome; unknown
472
556
+
Tyr
GTA
[ENA]
¢þ
>WENV170626365
FUWD013220988
[FUWD] metagenome; unknown
1011
927
-
Tyr
GTA
[ENA]
¢þ
>WENV170626367
FUWD013220989
[FUWD] metagenome; unknown
152
68
-
Tyr
GTA
[ENA]
¢þ
>SRA1029158
SRR035087.84387
454 Sequencing (SRP001808)
275
359
+
Tyr
GTA
[SRA]
>SRA1029362
SRR035087.115619
454 Sequencing (SRP001808)
328
412
+
Tyr
GTA
[SRA]
>SRA1042872
SRR035091.459633
454 Sequencing (SRP001812)
14
98
+
Tyr
GTA
[SRA]
>SRA1048221
SRR035094.130237
454 Sequencing (SRP001815)
126
210
+
Tyr
GTA
[SRA]
>SRA1049922
SRR035095.160873
454 Sequencing (SRP001816)
200
284
+
Tyr
GTA
[SRA]
>SRA1054863
SRR035099.237687
454 Sequencing (SRP001820)
215
131
-
Tyr
GTA
[SRA]
Identical group No.190286 (1 seq.)
>SRA1054626
SRR035099.177500
454 Sequencing (SRP001820)
396
312
-
Tyr
GTA
[SRA]
Identical group No.220692 (1 seq.)
>SRA1054644
SRR035099.181666
454 Sequencing (SRP001820)
362
279
-
Tyr
GTA
[SRA]
Identical group No.794100 (5 seq.)
>WENV170622514
FUWD013107523
[FUWD] metagenome; unknown
1386
1458
+
Tyr
GTA
[ENA]
¢þ
>WENV170630739
FUWD013321841
[FUWD] metagenome; unknown
1386
1458
+
Tyr
GTA
[ENA]
¢þ
>SRA1022619
SRR035083.433652
454 Sequencing (SRP001804)
68
140
+
Tyr
GTA
[SRA]
>SRA1033181
SRR035088.191397
454 Sequencing (SRP001809)
129
57
-
Tyr
GTA
[SRA]
>SRA1054239
SRR035099.90537
454 Sequencing (SRP001820)
282
354
+
Tyr
GTA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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