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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Acid Mine Drainage microbial communities from Richmond mine
Anticodon = CCA
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.270379 (14 seq.)
>W1711628718
MPOJ01000011
Nitrospirota
Leptospirillum ferriphilum [MPOJ]
83285
83361
+
Trp
CCA
[ENA]
¡û
>W1711628759
MPOK01000023
Nitrospirota
Leptospirillum ferriphilum [MPOK]
252
328
+
Trp
CCA
[ENA]
¡û
>W141000118
AADL01001679
Unclassified
mine drainage metagenome Group III [AADL]
1788
1864
+
Trp
CCA
[ENA]
¡û
>W141000182
AADL01002502
Unclassified
mine drainage metagenome Group III [AADL]
13361
13285
-
Trp
CCA
[ENA]
¡û
>W09106664
AAWO01000082
Unclassified
mine drainage metagenome rubarum [AAWO]
99197
99121
-
Trp
CCA
[ENA]
¡û
>W141803172
JPGK01000016
Nitrospirota
Leptospirillum ferriphilum [JPGK]
16486
16410
-
Trp
CCA
[ENA]
¡û
>W1911494741
OBMB01000001
Nitrospirota
Leptospirillum ferriphilum [OBMB]
604909
604833
-
Trp
CCA
[ENA]
¡û
>C151019644
CP007243
Nitrospirota
Leptospirillum ferriphilum YSK [CP007243]
1482591
1482515
-
Trp
CCA
[Ensembl]
¡û
>C151091656
CP012147
Nitrospirota
Leptospirillum sp. Group II 'CF-1' [CP012147]
990340
990416
+
Trp
CCA
[Ensembl]
¡û
>W1511705730
LGSH01000007
Nitrospirota
Leptospirillum ferriphilum Sp-Cl [LGSH]
184
260
+
Trp
CCA
[ENA]
¡û
>W121055902
AIJM01000034
Unclassified
mine drainage metagenome Group II 'C75' [AIJM]
34529
34605
+
Trp
CCA
[ENA]
¡û
>C131001631
CP002919
Nitrospirota
Leptospirillum ferriphilum ML-04 [CP002919]
1531237
1531161
-
Trp
CCA
[Ensembl]
¡û
>WENV077126
AADL01001679
Acid Mine Drainage microbial communities from Richmond mine
1787
1865
+
Trp
CCA
[ENA]
>WENV080276
AAWO01000082
Acid Mine Drainage microbial communities from Richmond mine
99198
99120
-
Trp
CCA
[ENA]
Identical group No.304170 (6 seq.)
>W141000023
AADL01000567
Unclassified
mine drainage metagenome Group III [AADL]
1475
1399
-
Trp
CCA
[ENA]
¡û
>W141085059
AURA01000313
Nitrospirota
Leptospirillum sp. Group IV 'UBA BS' [AURA]
3090
3166
+
Trp
CCA
[ENA]
¡û
>W09132224
ACNP01000065
Unclassified
mine drainage metagenome ferrodiazotrophum [ACNP]
13054
12978
-
Trp
CCA
[ENA]
¡û
>ENV09002126
ACXJ01010142
Mine drainage metagenome Contig1
3050
3126
+
Trp
CCA
[ENA]
¡û
>ENV09002233
ACXJ01011378
Mine drainage metagenome Contig1
13115
13039
-
Trp
CCA
[ENA]
¡û
>WENV077031
AADL01000567
Acid Mine Drainage microbial communities from Richmond mine
1476
1398
-
Trp
CCA
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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