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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Alveolata
Anticodon = TAC
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.480777 (2 seq.)
>CHL1810003192
HM222968
Alveolata
Chromerida sp. RM11 (HM222968)
84725
84799
+
Val
TAC
[ENA]
¡û
>CHL1810003202
HM222968
Alveolata
Chromerida sp. RM11 (HM222968)
59032
58958
-
Val
TAC
[ENA]
¡û
Identical group No.639039 (1 seq.)
>CHL1810046773
LC008447
Alveolata
Lepidodinium chlorophorum (LC008447)
35877
35951
+
Val
TAC
[ENA]
¡û
Identical group No.662102 (76 seq.)
>WENV180036767
FVAA010317339
[FVAA] soil metagenome; Soil
75
2
-
Val
TAC
[ENA]
¢þ
>WENV180038605
LLBY010000546
[LLBY] soil metagenome; soil from tomato rhizosphere
32329
32256
-
Val
TAC
[ENA]
¢þ
>WENV180040783
LLBZ010014679
[LLBZ] soil metagenome; soil from tomato rhizosphere
14856
14929
+
Val
TAC
[ENA]
¢þ
>WENV180357442
OBNN01010534
[OBNN] marine metagenome; Coastal water
471
544
+
Val
TAC
[ENA]
¢þ
>WENV180359125
OBNR01008494
[OBNR] marine metagenome; Seawater_00002010_00002149
309
236
-
Val
TAC
[ENA]
¢þ
>WENV180367841
OBOF01006078
[OBOF] marine metagenome; ENVO:00002010
280
353
+
Val
TAC
[ENA]
¢þ
>WENV180368750
OBOG01000010
[OBOG] marine metagenome; seawater
3408
3335
-
Val
TAC
[ENA]
¢þ
>WENV180375290
OBOL01001474
[OBOL] marine metagenome; Surface water
1491
1564
+
Val
TAC
[ENA]
¢þ
>WENV180394635
OBPS01030132
[OBPS] marine metagenome; ENVO:00002010 seawater
287
214
-
Val
TAC
[ENA]
¢þ
>WENV180591354
OCOV01013914
[OCOV] marine metagenome; ENVO:01000301
592
519
-
Val
TAC
[ENA]
¢þ
>WENV180594042
OCOY01018796
[OCOY] marine metagenome; ENVO:00002010
502
575
+
Val
TAC
[ENA]
¢þ
>WENV180650558
OCSY01072847
[OCSY] marine metagenome; 30 L Plastic container
32
105
+
Val
TAC
[ENA]
¢þ
>WENV181162820
OEIO01018292
[OEIO] marine metagenome; sea ice
577
504
-
Val
TAC
[ENA]
¢þ
>WENV181306871
OFIN01011365
[OFIN] marine metagenome; sea ice
532
459
-
Val
TAC
[ENA]
¢þ
>WENV181315118
OFJM01012938
[OFJM] marine metagenome; sea ice
351
422
+
Val
TAC
[ENA]
¢þ
>WENV181322389
OFKR01000976
[OFKR] marine metagenome; sea ice
1211
1140
-
Val
TAC
[ENA]
¢þ
>WENV181322870
OFKV01004663
[OFKV] marine metagenome; sea ice
569
641
+
Val
TAC
[ENA]
¢þ
>WENV181322927
OFKV01020072
[OFKV] marine metagenome; sea ice
547
474
-
Val
TAC
[ENA]
¢þ
>WENV181323905
OFKZ01028858
[OFKZ] marine metagenome; sea ice
431
359
-
Val
TAC
[ENA]
¢þ
>WENV181324054
OFLB01000425
[OFLB] marine metagenome; seawater
890
817
-
Val
TAC
[ENA]
¢þ
>WENV181324243
OFLD01002047
[OFLD] marine metagenome; sea ice
1021
948
-
Val
TAC
[ENA]
¢þ
>WENV181329600
OFLX01026663
[OFLX] seawater metagenome; seawater
181
109
-
Val
TAC
[ENA]
¢þ
>WENV183060139
OLHW01019825
[OLHW] seawater metagenome; Sea water
283
210
-
Val
TAC
[ENA]
¢þ
>WENV183614855
OOEA01004162
[OOEA] marine metagenome; sea ice
935
863
-
Val
TAC
[ENA]
¢þ
>WENV183615924
OOEC01005551
[OOEC] marine metagenome; sea ice
1168
1095
-
Val
TAC
[ENA]
¢þ
>WENV183615941
OOEC01008040
[OOEC] marine metagenome; sea ice
841
914
+
Val
TAC
[ENA]
¢þ
>WENV183616488
OOED01045426
[OOED] marine metagenome; seawater
181
109
-
Val
TAC
[ENA]
¢þ
>WENV183616738
OOEE01000119
[OOEE] marine metagenome; sea ice
2004
2077
+
Val
TAC
[ENA]
¢þ
>WENV183617602
OOEG01014289
[OOEG] marine metagenome; sea ice
436
509
+
Val
TAC
[ENA]
¢þ
>WENV183620401
OOFR01050454
[OOFR] marine metagenome; seawater
476
549
+
Val
TAC
[ENA]
¢þ
>WENV183620868
OOFS01068485
[OOFS] marine metagenome; sea ice
58
131
+
Val
TAC
[ENA]
¢þ
>WENV183621409
OOFU01000330
[OOFU] marine metagenome; sea ice
647
574
-
Val
TAC
[ENA]
¢þ
>WENV183622649
OOFW01000770
[OOFW] marine metagenome; sea ice
2269
2341
+
Val
TAC
[ENA]
¢þ
>WENV183622749
OOFW01005380
[OOFW] marine metagenome; sea ice
294
366
+
Val
TAC
[ENA]
¢þ
>WENV183622975
OOFX01000203
[OOFX] marine metagenome; sea ice
4102
4175
+
Val
TAC
[ENA]
¢þ
>WENV183623259
OOFX01045240
[OOFX] marine metagenome; sea ice
315
243
-
Val
TAC
[ENA]
¢þ
>WENV183623374
OOFY01001454
[OOFY] marine metagenome; sea ice
582
510
-
Val
TAC
[ENA]
¢þ
>WENV183623633
OOGA01023372
[OOGA] marine metagenome; sea ice
409
337
-
Val
TAC
[ENA]
¢þ
>WENV183624325
OOGD01001103
[OOGD] marine metagenome; sea ice
797
724
-
Val
TAC
[ENA]
¢þ
>WENV183624428
OOGD01008970
[OOGD] marine metagenome; sea ice
648
576
-
Val
TAC
[ENA]
¢þ
>WENV183624646
OOGD01078429
[OOGD] marine metagenome; sea ice
327
400
+
Val
TAC
[ENA]
¢þ
>WENV183624955
OOGE01045325
[OOGE] marine metagenome; sea ice
522
449
-
Val
TAC
[ENA]
¢þ
>WENV183625630
OOGG01004608
[OOGG] marine metagenome; sea ice
248
320
+
Val
TAC
[ENA]
¢þ
>WENV183627554
OOGL01011912
[OOGL] marine metagenome; sea ice
627
699
+
Val
TAC
[ENA]
¢þ
>WENV183628234
OOGN01000363
[OOGN] marine metagenome; sea ice
4180
4251
+
Val
TAC
[ENA]
¢þ
>WENV183628447
OOGN01053461
[OOGN] marine metagenome; sea ice
133
206
+
Val
TAC
[ENA]
¢þ
>WENV183628614
OOGO01003437
[OOGO] marine metagenome; sea ice
1669
1742
+
Val
TAC
[ENA]
¢þ
>WENV183629841
OOGQ01020123
[OOGQ] marine metagenome; seawater
163
90
-
Val
TAC
[ENA]
¢þ
>WENV183631084
OOGU01026982
[OOGU] marine metagenome; sea ice
789
716
-
Val
TAC
[ENA]
¢þ
>ENV08001516
ABNF01027519
freshwater metagenome; microbial fraction from tilapia pond at Kent SeaTech (Salton See, CA)
10
83
+
Val
TAC
[ENA]
¡û
>WENV170024576
BCQL01077975
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
533
460
-
Val
TAC
[ENA]
¢þ
>WENV170567067
FLLY01038718
[FLLY] seawater metagenome; seawater
181
109
-
Val
TAC
[ENA]
¢þ
>WENV170568726
FLMP01071408
[FLMP] seawater metagenome; seawater
955
882
-
Val
TAC
[ENA]
¢þ
>WENV170639214
JFJP01001700
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
22764
22691
-
Val
TAC
[ENA]
¢þ
>WENV170639236
JFJP01001704
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
4209
4282
+
Val
TAC
[ENA]
¢þ
>WENV170639251
JFJP01001711
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
3919
3992
+
Val
TAC
[ENA]
¢þ
>CHL1810000400
AP011960
Stramenopiles
Fistulifera solaris JPCC DA0580 (AP011960)
114490
114417
-
Val
TAC
[ENA]
¡û
>CHL1810002629
GU591327
Alveolata
Durinskia baltica CS-38 (GU591327)
16821
16894
+
Val
TAC
[ENA]
¡û
>CHL1810008316
KC509521
Stramenopiles
Coscinodiscus radiatus ccmp310 (KC509521)
42672
42599
-
Val
TAC
[ENA]
¡û
>CHL1810008372
KC509523
Stramenopiles
Didymosphenia geminata BCC011 (KC509523)
16968
16897
-
Val
TAC
[ENA]
¡û
>CHL1810013632
KJ958479
Stramenopiles
Chaetoceros simplex (KJ958479)
55863
55790
-
Val
TAC
[ENA]
¡û
>CHL1810013698
KJ958484
Stramenopiles
Cerataulina daemon (KJ958484)
8299
8372
+
Val
TAC
[ENA]
¡û
>CHL1810013725
KJ958485
Stramenopiles
Thalassiosira weissflogii (KJ958485)
19636
19709
+
Val
TAC
[ENA]
¡û
>CHL1810034287
KX619437
Stramenopiles
Toxarium undulatum ECT3802 (KX619437)
46986
46913
-
Val
TAC
[ENA]
¡û
>CHL1810059289
MG755793
Stramenopiles
Rhizosolenia setigera (MG755793)
42746
42675
-
Val
TAC
[ENA]
¡û
>CHL1810059399
MG755799
Stramenopiles
Actinocyclus subtilis (MG755799)
43205
43132
-
Val
TAC
[ENA]
¡û
>CHL1810059428
MG755800
Stramenopiles
Entomoneis sp. (MG755800)
16765
16692
-
Val
TAC
[ENA]
¡û
>CHL1810059452
MG755801
Stramenopiles
Triceratium dubium (MG755801)
53506
53433
-
Val
TAC
[ENA]
¡û
>CHL1810059514
MG755803
Stramenopiles
Psammoneis obaidii (MG755803)
34976
34903
-
Val
TAC
[ENA]
¡û
>CHL1810059517
MG755804
Stramenopiles
Cyclotella pseudostelligera (MG755804)
19595
19668
+
Val
TAC
[ENA]
¡û
>CHL090102744
EF067920
stramenopiles
Phaeodactylum tricornutum
17042
16969
-
Val
TAC
[ENA]
¡û
>CHL090102747
EF067921
stramenopiles
Thalassiosira pseudonana
19666
19739
+
Val
TAC
[ENA]
¡û
>CHL090103360
Z67753
stramenopiles
Odontella sinensis
66555
66627
+
Val
TAC
[ENA]
¡û
>SRA1001611
SRR001073.48862
Tilapia Farm, microbial fraction from tilapia pond at Kent SeaTech (Salton See, CA) (SRP000161)
10
83
+
Val
TAC
[SRA]
>SRA1003621
SRR002327.71134
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
142
215
+
Val
TAC
[SRA]
>SRA1004113
SRR002328.155627
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
81
8
-
Val
TAC
[SRA]
Identical group No.670054 (3 seq.)
>WENV180636635
OCRF01026532
[OCRF] marine metagenome; niskin bottle
588
661
+
Val
TAC
[ENA]
¢þ
>CHL1810002656
GU591328
Alveolata
Kryptoperidinium foliaceum CCMP1326 (GU591328)
19504
19575
+
Val
TAC
[ENA]
¡û
>CHL1810019280
KR709240
Stramenopiles
Pseudo-nitzschia multiseries (KR709240)
56080
56153
+
Val
TAC
[ENA]
¡û
Identical group No.706697 (2 seq.)
>CHL090101385
AY217738
Alveolata
Eimeria tenella
32469
32540
+
Val
TAC
[ENA]
¡û
>CHL090101395
AY217738
Alveolata
Eimeria tenella
2253
2182
-
Val
TAC
[ENA]
¡û
Identical group No.762139 (2 seq.)
>CHL090200160
U87145
Alveolata
Toxoplasma gondii
32751
32822
+
Val
TAC
[ENA]
¡û
>CHL090200162
U87145
Alveolata
Toxoplasma gondii
2246
2175
-
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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