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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
Anticodon = CTT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.467670 (17 seq.)
>WENV180209120
OBAK01019589
[OBAK] marine metagenome; ENVO.00002150
232
157
-
Lys
CTT
[ENA]
¢þ
>WENV180209892
OBAL01035984
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
316
389
+
Lys
CTT
[ENA]
¢þ
>WENV180359871
OBNS01052908
[OBNS] marine metagenome; Seawater
285
210
-
Lys
CTT
[ENA]
¢þ
>WENV180360505
OBNU01000311
[OBNU] marine metagenome; ENVO:00000021 'freshwater lake
3437
3512
+
Lys
CTT
[ENA]
¢þ
>WENV180361722
OBNW01000129
[OBNW] marine metagenome; ENVO:00002010, 'SEA WATER
1336
1261
-
Lys
CTT
[ENA]
¢þ
>WENV180365083
OBOB01008478
[OBOB] marine metagenome; ENVO:00002019, 'BRACKISH WATER
161
236
+
Lys
CTT
[ENA]
¢þ
>WENV180367734
OBOF01002032
[OBOF] marine metagenome; ENVO:00002010
380
305
-
Lys
CTT
[ENA]
¢þ
>WENV180370282
OBOH01059501
[OBOH] marine metagenome; ENVO:00002010
287
212
-
Lys
CTT
[ENA]
¢þ
>WENV180390358
OBPK01109551
[OBPK] marine metagenome; Sterile flask
179
104
-
Lys
CTT
[ENA]
¢þ
>WENV180392886
OBPP01019707
[OBPP] marine metagenome; ENVO:00002042
292
367
+
Lys
CTT
[ENA]
¢þ
>WENV180591194
OCOV01003018
[OCOV] marine metagenome; ENVO:01000301
264
339
+
Lys
CTT
[ENA]
¢þ
>WENV002415
AACY020067568
Marine microbial communities from Global Ocean Sampling (GOS)
1253
1176
-
Lys
CTT
[ENA]
>SRA1000044
SRR000284.28670
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
85
10
-
Lys
CTT
[SRA]
>WENV033116
AACY021501860
Marine microbial communities from Global Ocean Sampling (GOS)
609
532
-
Lys
CTT
[ENA]
>WENV055919
AACY023244057
Marine microbial communities from Global Ocean Sampling (GOS)
170
93
-
Lys
CTT
[ENA]
>WENV056657
AACY023261763
Marine microbial communities from Global Ocean Sampling (GOS)
1053
976
-
Lys
CTT
[ENA]
>WENV070570
AACY023814132
Marine microbial communities from Global Ocean Sampling (GOS)
568
491
-
Lys
CTT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK