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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
Anticodon = CCG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.306940 (20 seq.)
>WENV180042476
LQAF01000302
[LQAF] bioreactor metagenome; bioreactor_2 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
4417
4493
+
Arg
CCG
[ENA]
¢þ
>WENV180210295
OBAL01195724
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
162
238
+
Arg
CCG
[ENA]
¢þ
>WENV180368609
OBOF01151932
[OBOF] marine metagenome; ENVO:00002010
270
346
+
Arg
CCG
[ENA]
¢þ
>W141055186
AONB01000013
Gammaproteobacteria
Nitrincola nitratireducens AK23 [AONB]
43119
43195
+
Arg
CCG
[ENA]
¡û
>WENV180636608
OCRF01024152
[OCRF] marine metagenome; niskin bottle
223
147
-
Arg
CCG
[ENA]
¢þ
>WENV170150852
CEOC01162703
[CEOC] marine metagenome genome assembly TARA_036_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
188
112
-
Arg
CCG
[ENA]
¢þ
>WENV170167175
CEOO01183923
[CEOO] marine metagenome genome assembly TARA_036_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
513
589
+
Arg
CCG
[ENA]
¢þ
>WENV170626125
FUWD013214069
[FUWD] metagenome; unknown
297
221
-
Arg
CCG
[ENA]
¢þ
>WENV170655963
JTFN01103891
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
20
96
+
Arg
CCG
[ENA]
¢þ
>WENV170656233
JTFO01005177
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
3267
3191
-
Arg
CCG
[ENA]
¢þ
>WENV170657194
JTFO01099380
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
256
180
-
Arg
CCG
[ENA]
¢þ
>WENV170658434
JTFP01112493
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
470
394
-
Arg
CCG
[ENA]
¢þ
>WENV170837467
MDSZ01149782
[MDSZ] marine metagenome; seawater
29878
29954
+
Arg
CCG
[ENA]
¢þ
>W141557267
JHUZ01000014
Gammaproteobacteria
Balneatrix alpica DSM 16621 [JHUZ]
132678
132754
+
Arg
CCG
[ENA]
¡û
>W141712329
JMQN01000036
Gammaproteobacteria
Marinobacterium lacunae AK27 [JMQN]
135015
134939
-
Arg
CCG
[ENA]
¡û
>SRA1000061
SRR000285.14552
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
25
101
+
Arg
CCG
[SRA]
>W1511349169
JRLB01000022
Gammaproteobacteria
Nitrincola sp. A-D6 [JRLB]
9018
8942
-
Arg
CCG
[ENA]
¡û
>WENV050688
AACY022894055
Marine microbial communities from Global Ocean Sampling (GOS)
724
648
-
Arg
CCG
[ENA]
>WENV069194
AACY023756320
Marine microbial communities from Global Ocean Sampling (GOS)
1151
1227
+
Arg
CCG
[ENA]
>WENV076742
AACY024108384
Marine microbial communities from Global Ocean Sampling (GOS)
997
921
-
Arg
CCG
[ENA]
Identical group No.381051 (1 seq.)
>SRA1000056
SRR000285.4865
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
8
84
+
Arg
CCG
[SRA]
Identical group No.812640 (1 seq.)
>SRA1000015
SRR000281.18016
Bacterial carbon processing by generalist species in the coastal ocean. (SRP000056)
21
94
+
Arg
CCG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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