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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
Anticodon = AGG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.664480 (15 seq.)
>WENV181304811
OFIC01009030
[OFIC] marine metagenome; sea ice
362
434
+
Pro
AGG
[ENA]
¢þ
>WENV181304930
OFIE01000491
[OFIE] marine metagenome; sea ice
316
387
+
Pro
AGG
[ENA]
¢þ
>WENV181306833
OFIN01002324
[OFIN] marine metagenome; sea ice
828
899
+
Pro
AGG
[ENA]
¢þ
>WENV181322759
OFKU01010727
[OFKU] marine metagenome; sea ice
517
446
-
Pro
AGG
[ENA]
¢þ
>WENV181371626
OFQV01028358
[OFQV] wastewater metagenome; WWTP Cannobio (Effluent)
97
26
-
Pro
AGG
[ENA]
¢þ
>WENV183614669
OODW01018774
[OODW] marine metagenome; sea ice
208
279
+
Pro
AGG
[ENA]
¢þ
>WENV183615095
OOEA01055003
[OOEA] marine metagenome; sea ice
147
218
+
Pro
AGG
[ENA]
¢þ
>WENV183617963
OOFL01000305
[OOFL] marine metagenome; seawater
1168
1096
-
Pro
AGG
[ENA]
¢þ
>WENV183621075
OOFT01004721
[OOFT] marine metagenome; sea ice
1185
1114
-
Pro
AGG
[ENA]
¢þ
>WENV183622694
OOFW01002103
[OOFW] marine metagenome; sea ice
279
351
+
Pro
AGG
[ENA]
¢þ
>WENV183631390
OOGU01096638
[OOGU] marine metagenome; sea ice
348
420
+
Pro
AGG
[ENA]
¢þ
>WENV170986999
MWVX01108518
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
423
495
+
Pro
AGG
[ENA]
¢þ
>SRA1015340
SRR023846.24075
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
220
149
-
Pro
AGG
[SRA]
>SRA1015573
SRR023846.115632
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
91
20
-
Pro
AGG
[SRA]
>SRA1016349
SRR023846.461128
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
92
21
-
Pro
AGG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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