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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
Anticodon = GAA
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.2186 (8 seq.)
>SRA1014385
SRR023845.116260
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
10
104
+
Phe
GAA
[SRA]
>SRA1014419
SRR023845.131076
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
25
119
+
Phe
GAA
[SRA]
>SRA1015134
SRR023845.471655
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
75
169
+
Phe
GAA
[SRA]
>SRA1015607
SRR023846.131120
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
133
227
+
Phe
GAA
[SRA]
>SRA1015857
SRR023846.230934
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
109
203
+
Phe
GAA
[SRA]
>SRA1015925
SRR023846.265852
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
208
114
-
Phe
GAA
[SRA]
>SRA1016322
SRR023846.448838
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
123
217
+
Phe
GAA
[SRA]
>SRA1016467
SRR023846.512875
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
149
55
-
Phe
GAA
[SRA]
Identical group No.3110 (1 seq.)
>SRA1016504
SRR023846.535004
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
133
227
+
Phe
GAA
[SRA]
Identical group No.233621 (1 seq.)
>SRA1015179
SRR023845.490005
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
21
99
+
Phe
GAA
[SRA]
Identical group No.525553 (1 seq.)
>SRA1014187
SRR023845.32559
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
39
111
+
Phe
GAA
[SRA]
Identical group No.525566 (5 seq.)
>SRA1014525
SRR023845.181718
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
7
82
+
Phe
GAA
[SRA]
>SRA1014860
SRR023845.348334
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
85
10
-
Phe
GAA
[SRA]
>SRA1015115
SRR023845.465466
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
7
82
+
Phe
GAA
[SRA]
>SRA1015435
SRR023846.56176
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
182
107
-
Phe
GAA
[SRA]
>SRA1015477
SRR023846.78296
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
182
107
-
Phe
GAA
[SRA]
Identical group No.628154 (1 seq.)
>SRA1015592
SRR023846.124750
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
159
232
+
Phe
GAA
[SRA]
Identical group No.628168 (1 seq.)
>SRA1016188
SRR023846.391358
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
72
-1
-
Phe
GAA
[SRA]
Identical group No.697299 (2 seq.)
>SRA1014565
SRR023845.202109
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
215
289
+
Phe
GAA
[SRA]
>SRA1014691
SRR023845.265002
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
215
289
+
Phe
GAA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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