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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
Anticodon = GAT
HIT:
12 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.68830 (1 seq.)
>SRA1016159
SRR023846.374259
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
100
14
-
Ile
GAT
[SRA]
Identical group No.236654 (1 seq.)
>SRA1015250
SRR023845.519599
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
35
113
+
Ile
GAT
[SRA]
Identical group No.266338 (5 seq.)
>SRA1015635
SRR023846.140534
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
132
207
+
Ile
GAT
[SRA]
>SRA1015832
SRR023846.218122
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
131
206
+
Ile
GAT
[SRA]
>SRA1015935
SRR023846.270168
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
131
206
+
Ile
GAT
[SRA]
>SRA1016307
SRR023846.443864
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
131
206
+
Ile
GAT
[SRA]
>SRA1016390
SRR023846.477157
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
131
206
+
Ile
GAT
[SRA]
Identical group No.266339 (1 seq.)
>SRA1015785
SRR023846.200060
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
179
102
-
Ile
GAT
[SRA]
Identical group No.266344 (1 seq.)
>SRA1016437
SRR023846.496725
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
94
17
-
Ile
GAT
[SRA]
Identical group No.266345 (1 seq.)
>SRA1016520
SRR023846.542042
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
74
-1
-
Ile
GAT
[SRA]
Identical group No.337618 (1 seq.)
>SRA1014528
SRR023845.185799
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
232
156
-
Ile
GAT
[SRA]
Identical group No.337627 (2 seq.)
>SRA1014757
SRR023845.300714
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
106
179
+
Ile
GAT
[SRA]
>SRA1015278
SRR023845.536889
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
163
236
+
Ile
GAT
[SRA]
Identical group No.337638 (1 seq.)
>SRA1015052
SRR023845.440581
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
204
277
+
Ile
GAT
[SRA]
Identical group No.429130 (1 seq.)
>SRA1016444
SRR023846.499365
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
178
102
-
Ile
GAT
[SRA]
Identical group No.429132 (1 seq.)
>SRA1016471
SRR023846.513916
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
220
144
-
Ile
GAT
[SRA]
Identical group No.697290 (3 seq.)
>SRA1014319
SRR023845.87784
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
203
129
-
Ile
GAT
[SRA]
>SRA1014353
SRR023845.99302
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
203
129
-
Ile
GAT
[SRA]
>SRA1014937
SRR023845.390493
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
202
128
-
Ile
GAT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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