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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
Anticodon = GTG
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.337603 (1 seq.)
>SRA1014186
SRR023845.32243
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
91
167
+
His
GTG
[SRA]
Identical group No.337625 (2 seq.)
>SRA1014722
SRR023845.282534
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
266
191
-
His
GTG
[SRA]
>SRA1015263
SRR023845.527493
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
186
111
-
His
GTG
[SRA]
Identical group No.337645 (1 seq.)
>SRA1015285
SRR023845.540906
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
46
122
+
His
GTG
[SRA]
Identical group No.429122 (1 seq.)
>SRA1015861
SRR023846.232692
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
57
133
+
His
GTG
[SRA]
Identical group No.525585 (1 seq.)
>SRA1014968
SRR023845.402154
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
157
231
+
His
GTG
[SRA]
Identical group No.628148 (1 seq.)
>SRA1015502
SRR023846.86649
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
136
210
+
His
GTG
[SRA]
Identical group No.628151 (1 seq.)
>SRA1015547
SRR023846.107306
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
13
88
+
His
GTG
[SRA]
Identical group No.761310 (2 seq.)
>SRA1016308
SRR023846.444064
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
54
127
+
His
GTG
[SRA]
>SRA1016355
SRR023846.461936
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
54
127
+
His
GTG
[SRA]
Identical group No.799248 (1 seq.)
>SRA1014475
SRR023845.156204
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
95
23
-
His
GTG
[SRA]
Identical group No.799254 (1 seq.)
>SRA1015147
SRR023845.477599
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
147
220
+
His
GTG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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