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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
Anticodon = TCG
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.337608 (1 seq.)
>SRA1014314
SRR023845.85471
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
15
91
+
Arg
TCG
[SRA]
Identical group No.337622 (1 seq.)
>SRA1014638
SRR023845.236836
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
166
91
-
Arg
TCG
[SRA]
Identical group No.429117 (1 seq.)
>SRA1015410
SRR023846.49120
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
110
183
+
Arg
TCG
[SRA]
Identical group No.429124 (1 seq.)
>SRA1016034
SRR023846.317978
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
179
255
+
Arg
TCG
[SRA]
Identical group No.525556 (2 seq.)
>SRA1014247
SRR023845.54043
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
60
132
+
Arg
TCG
[SRA]
>SRA1015591
SRR023846.123942
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
92
166
+
Arg
TCG
[SRA]
Identical group No.525564 (1 seq.)
>SRA1014446
SRR023845.145531
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
165
91
-
Arg
TCG
[SRA]
Identical group No.628160 (1 seq.)
>SRA1015763
SRR023846.186915
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
179
254
+
Arg
TCG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK