This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
Anticodon = TCG
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.219119 (1 seq.)
>SRA1014314
SRR023845.85471
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
15
91
+
Arg
TCG
[SRA]
Identical group No.219126 (1 seq.)
>SRA1014638
SRR023845.236836
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
166
91
-
Arg
TCG
[SRA]
Identical group No.268538 (1 seq.)
>SRA1015410
SRR023846.49120
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
110
183
+
Arg
TCG
[SRA]
Identical group No.268543 (1 seq.)
>SRA1016034
SRR023846.317978
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
179
255
+
Arg
TCG
[SRA]
Identical group No.306369 (6 seq.)
>WENV181378638
OFRB01040622
[OFRB] wastewater metagenome; Exp Tend CN 0WW
502
574
+
Arg
TCG
[ENA]
¢þ
>WENV170981155
MWVT01034710
[MWVT] soil metagenome; TG5-1 sample; Antarctic (ecotone) soil
309
381
+
Arg
TCG
[ENA]
¢þ
>WENV170983761
MWVV01086187
[MWVV] soil metagenome; PT-2 sample; Antarctic (ecotone) soil
107
179
+
Arg
TCG
[ENA]
¢þ
>WENV170988266
MWVX01430386
[MWVX] soil metagenome; MtG-4 sample; Antarctic (ecotone) soil
95
167
+
Arg
TCG
[ENA]
¢þ
>SRA1014247
SRR023845.54043
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
60
132
+
Arg
TCG
[SRA]
>SRA1015591
SRR023846.123942
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
92
166
+
Arg
TCG
[SRA]
Identical group No.328658 (1 seq.)
>SRA1014446
SRR023845.145531
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
165
91
-
Arg
TCG
[SRA]
Identical group No.385151 (2 seq.)
>WENV180040313
LLBY010659788
[LLBY] soil metagenome; soil from tomato rhizosphere
427
500
+
Arg
TCG
[ENA]
¢þ
>SRA1015763
SRR023846.186915
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
179
254
+
Arg
TCG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK