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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Environmental sample from ENV division of INSDC
Anticodon = CCC
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.398585 (4 seq.)
>At0092
DP000238
Nitrososphaerota
Cenarchaeum symbiosum [DP000238]
1898649
1898576
-
Gly
CCC
[Ensembl]
¡û
>ENV004153
DQ397560
Environmental sample from ENV division of INSDC
27469
27545
+
Gly
CCC
[ENA]
>ENV004165
DQ397574
Environmental sample from ENV division of INSDC
17020
17096
+
Gly
CCC
[ENA]
>ENV004208
DQ397830
Environmental sample from ENV division of INSDC
16950
16874
-
Gly
CCC
[ENA]
Identical group No.509921 (12 seq.)
>W131162312
AQYO01000055
Unclassified
Cloacimonetes bacterium JGI 0000039-A21 WWE1 bacterium JGI 0000039-A21 [AQYO]
5962
5887
-
Gly
CCC
[ENA]
¡û
>W131162331
AQYP01000067
Unclassified
Cloacimonetes bacterium JGI 0000039-G13 WWE1 bacterium JGI 0000039-G13 [AQYP]
8395
8320
-
Gly
CCC
[ENA]
¡û
>W131192569
ASMC01000005
Unclassified
Cloacimonetes bacterium JGI 0000039-I17 WWE1 bacterium JGI 0000039-I17 [ASMC]
3754
3679
-
Gly
CCC
[ENA]
¡û
>WENV180096426
MTBK01128644
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
947
872
-
Gly
CCC
[ENA]
¢þ
>W141139482
AWNP01000064
Unclassified
Cloacimonetes bacterium JGI OTU-3 [AWNP]
8395
8320
-
Gly
CCC
[ENA]
¡û
>W141139501
AWNQ01000013
Unclassified
Cloacimonetes bacterium JGI OTU-4 [AWNQ]
5962
5887
-
Gly
CCC
[ENA]
¡û
>WENV170971857
MTKX01013700
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1318
1243
-
Gly
CCC
[ENA]
¢þ
>WENV170972438
MTKX01030091
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1158
1233
+
Gly
CCC
[ENA]
¢þ
>WENV170976426
MTKZ01007648
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2264
2189
-
Gly
CCC
[ENA]
¢þ
>WENV170976916
MTKZ01014158
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2214
2139
-
Gly
CCC
[ENA]
¢þ
>C151097967
CU466930
Unclassified
Candidatus Cloacimonas acidaminovorans str. Evry [CU466930]
1035120
1035045
-
Gly
CCC
-
¡û
>ENV003112
CU466930
Environmental sample from ENV division of INSDC
1035121
1035044
-
Gly
CCC
[ENA]
Identical group No.738113 (3 seq.)
>WENV170004177
AGTN01589947
[AGTN] bioreactor metagenome; poplar biomass
161
89
-
Gly
CCC
[ENA]
¢þ
>At2066
AM114193
Euryarchaeota
Methanocella arvoryzae MRE50 [AM114193]
1009999
1010070
+
Gly
CCC
[Ensembl]
¡û
>ENV000762
AM114193
Environmental sample from ENV division of INSDC
1009999
1010073
+
Gly
CCC
[Ensembl]
Identical group No.782527 (3 seq.)
>C08011152
AP009510
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 genomovar Ri2008 [AP009510]
113953
113883
-
Gly
CCC
-
¡û
>C181002109
AP017459
Elusimicrobiota
Candidatus Endomicrobium trichonymphae Rs-D17 [AP017459]
112349
112279
-
Gly
CCC
-
¡û
>ENV000843
AP009510
Environmental sample from ENV division of INSDC
113953
113880
-
Gly
CCC
[ENA]
Identical group No.812235 (3 seq.)
>C181227271
LT934425
Planctomycetota
Candidatus Kuenenia stuttgartiensis [LT934425]
413279
413206
-
Gly
CCC
-
¡û
>W1911498152
OCTL01000004
Planctomycetota
Candidatus Kuenenia stuttgartiensis [OCTL]
174020
174093
+
Gly
CCC
[ENA]
¡û
>ENV003068
CT573071
Environmental sample from ENV division of INSDC
1770062
1770137
+
Gly
CCC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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