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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Environmental sample from ENV division of INSDC
Anticodon = CGG
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.241051 (13 seq.)
>W131162337
AQYP01000102
Unclassified
Cloacimonetes bacterium JGI 0000039-G13 WWE1 bacterium JGI 0000039-G13 [AQYP]
11229
11152
-
Pro
CGG
[ENA]
¡û
>W1711136028
LUZS01000049
Unclassified
Cloacimonetes bacterium WWEI_01 [LUZS]
14291
14214
-
Pro
CGG
[ENA]
¡û
>W131192596
ASME01000004
Unclassified
Cloacimonetes bacterium JGI 0000059-F17 WWE1 bacterium JGI 0000059-F17 [ASME]
12010
12087
+
Pro
CGG
[ENA]
¡û
>WENV180094651
MTBK01021514
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
228
305
+
Pro
CGG
[ENA]
¢þ
>WENV180096828
MTBK01151078
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
558
635
+
Pro
CGG
[ENA]
¢þ
>W141139476
AWNP01000031
Unclassified
Cloacimonetes bacterium JGI OTU-3 [AWNP]
11229
11152
-
Pro
CGG
[ENA]
¡û
>WENV170671626
LAHU01110038
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
1585
1508
-
Pro
CGG
[ENA]
¢þ
>WENV170972233
MTKX01023809
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
11881
11958
+
Pro
CGG
[ENA]
¢þ
>WENV170975556
MTKZ01001246
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
12663
12740
+
Pro
CGG
[ENA]
¢þ
>WENV170976153
MTKZ01005076
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
4756
4679
-
Pro
CGG
[ENA]
¢þ
>C151097965
CU466930
Unclassified
Candidatus Cloacimonas acidaminovorans str. Evry [CU466930]
1195018
1194941
-
Pro
CGG
-
¡û
>W1610947148
LUZS01000049
Unclassified
Cloacimonetes bacterium WWEI_01 [LUZS]
14291
14214
-
Pro
CGG
[ENA]
¡û
>ENV003115
CU466930
Environmental sample from ENV division of INSDC
1195019
1194940
-
Pro
CGG
[ENA]
Identical group No.254662 (4 seq.)
>A171000077
AP011532
Euryarchaeota
Methanocella paludicola SANAE [AP011532]
1660721
1660644
-
Pro
CGG
-
¡û
>A171002912
CP003243
Euryarchaeota
Methanocella conradii HZ254 [CP003243]
2166746
2166823
+
Pro
CGG
-
¡û
>At2081
AM114193
Euryarchaeota
Methanocella arvoryzae MRE50 [AM114193]
2882934
2883011
+
Pro
CGG
[Ensembl]
¡û
>ENV000787
AM114193
Environmental sample from ENV division of INSDC
2882933
2883012
+
Pro
CGG
[Ensembl]
Identical group No.257809 (3 seq.)
>C181227262
LT934425
Planctomycetota
Candidatus Kuenenia stuttgartiensis [LT934425]
1463746
1463669
-
Pro
CGG
-
¡û
>W1911498194
OCTL01000102
Planctomycetota
Candidatus Kuenenia stuttgartiensis [OCTL]
133993
133916
-
Pro
CGG
[ENA]
¡û
>ENV003073
CT573072
Environmental sample from ENV division of INSDC
270541
270464
-
Pro
CGG
[ENA]
Identical group No.398385 (1 seq.)
>ENV000132
AC160099
Environmental sample from ENV division of INSDC
13453
13529
+
Pro
CGG
[ENA]
Identical group No.398592 (4 seq.)
>At0070
DP000238
Nitrososphaerota
Cenarchaeum symbiosum [DP000238]
1706771
1706844
+
Pro
CGG
[Ensembl]
¡û
>ENV004189
DQ397615
Environmental sample from ENV division of INSDC
7356
7432
+
Pro
CGG
[ENA]
>ENV004200
DQ397638
Environmental sample from ENV division of INSDC
11653
11577
-
Pro
CGG
[ENA]
>ENV004240
DQ397865
Environmental sample from ENV division of INSDC
24228
24150
-
Pro
CGG
[ENA]
Identical group No.398632 (3 seq.)
>W1610636483
LIUI01000038
Fibrobacterota
Fibrobacteria bacterium GUT307 [LIUI]
19748
19675
-
Pro
CGG
[ENA]
¡û
>ENV005257
EU024891
Environmental sample from ENV division of INSDC
3203
3125
-
Pro
CGG
[ENA]
>W1710771256
LIUI01000038
Fibrobacterota
Fibrobacteria bacterium GUT307 [LIUI]
19748
19675
-
Pro
CGG
[ENA]
¡û
Identical group No.593391 (4 seq.)
>WENV080549
ABDH01030947
Gut microbiome of termites
444
519
+
Pro
CGG
[ENA]
>WENV080561
ABDH01031924
Gut microbiome of termites
1107
1032
-
Pro
CGG
[ENA]
>WENV080620
ABDH01038623
Gut microbiome of termites
2782
2707
-
Pro
CGG
[ENA]
>ENV005259
EU024894
Environmental sample from ENV division of INSDC
19382
19459
+
Pro
CGG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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