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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Euryarchaeota
Anticodon = GAA
HIT:
24 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.274383 (14 seq.)
>A171000469
CP001365
Euryarchaeota
Halorubrum lacusprofundi ATCC 49239 [CP001365, CP001366]
56354
56281
-
Phe
GAA
-
¡û
>W1910006739
BBJP01000007
Euryarchaeota
Halorubrum halophilum B8 [BBJP]
14400
14473
+
Phe
GAA
[ENA]
¡û
>W1910193757
CVRT01000109
Euryarchaeota
Halorubrum sp. SD626R [CVRT]
30744
30817
+
Phe
GAA
[ENA]
¡û
>W1910193811
CVUA01000001
Euryarchaeota
Halolamina sediminis halo-7 halo7 [CVUA]
462473
462400
-
Phe
GAA
[ENA]
¡û
>W1910230624
FOXI01000005
Euryarchaeota
Halolamina pelagica CGMCC 1.10329 [FOXI]
9878
9805
-
Phe
GAA
[ENA]
¡û
>W1910572769
JNFH02000066
Euryarchaeota
Halorubrum saccharovorum H3 [JNFH]
7449
7376
-
Phe
GAA
[ENA]
¡û
>W1910575027
JQKV01000008
Euryarchaeota
Halorubrum sp. BV1 [JQKV]
146
73
-
Phe
GAA
[ENA]
¡û
>W1910749500
MJCD01000010
Euryarchaeota
Halorubrum lacusprofundi HLS1 [MJCD]
97136
97209
+
Phe
GAA
[ENA]
¡û
>W1910752264
MKFG01000007
Euryarchaeota
Halorubrum lacusprofundi DL18 [MKFG]
29431
29358
-
Phe
GAA
[ENA]
¡û
>W1910911749
NHOA01000104
Euryarchaeota
Halorubrum persicum C49 [NHOA]
12363
12290
-
Phe
GAA
[ENA]
¡û
>W1911693747
QLVG01000038
Euryarchaeota
Halorussus litoreus HD8-51 [QLVG]
68795
68722
-
Phe
GAA
[ENA]
¡û
>C151003920
CP002988
Euryarchaeota
halophilic archaeon DL31 [CP002988]
2692816
2692889
+
Phe
GAA
[Ensembl]
¡û
>W1610000508
ABEB01000003
Euryarchaeota
Halorubrum lacusprofundi ATCC 49239 [ABEB]
377965
378038
+
Phe
GAA
[ENA]
¡û
>W1610675794
LKIR01000135
Euryarchaeota
Haloparvum sedimenti DYS4 [LKIR]
328690
328766
+
Phe
GAA
[ENA]
¡û
Identical group No.274462 (3 seq.)
>A171000767
CP001688
Euryarchaeota
Halomicrobium mukohataei DSM 12286 [CP001688]
593119
593192
+
Phe
GAA
-
¡û
>W1610000826
ABTY01000001
Euryarchaeota
Halomicrobium mukohataei DSM 12286 [ABTY]
22400
22327
-
Phe
GAA
[ENA]
¡û
>W1610018963
AQZY01000004
Euryarchaeota
Halomicrobium katesii DSM 19301 [AQZY]
346263
346336
+
Phe
GAA
[ENA]
¡û
Identical group No.275014 (12 seq.)
>A171000275
CP000867
Euryarchaeota
Methanococcus maripaludis [CP000867]
961979
961905
-
Phe
GAA
-
¡û
>A171001552
CP002057
Euryarchaeota
Methanococcus voltae [CP002057]
1462949
1462874
-
Phe
GAA
-
¡û
>A171002504
CP002913
Euryarchaeota
Methanococcus maripaludis X1 [CP002913]
1687048
1687122
+
Phe
GAA
-
¡û
>At1081
CP000609
Euryarchaeota
Methanococcus maripaludis C5 [CP000609]
1699854
1699781
-
Phe
GAA
[Ensembl]
¡û
>At1087
CP000745
Euryarchaeota
Methanococcus maripaludis [CP000745]
894221
894294
+
Phe
GAA
[Ensembl]
¡û
>At1138
BX950229
Euryarchaeota
Methanococcus maripaludis S2 [BX950229]
1601495
1601568
+
Phe
GAA
[Ensembl]
¡û
>At1161
CP000742
Euryarchaeota
Methanococcus vannielii SB [CP000742]
975702
975775
+
Phe
GAA
[Ensembl]
¡û
>W1610000338
AAWI01000004
Euryarchaeota
Methanococcus maripaludis C5 [AAWI]
206557
206631
+
Phe
GAA
[ENA]
¡û
>W1610000350
AAWX01000001
Euryarchaeota
Methanococcus vannielii SB [AAWX]
712272
712346
+
Phe
GAA
[ENA]
¡û
>W1610000464
AAZM01000001
Euryarchaeota
Methanococcus maripaludis C7 [AAZM]
94489
94415
-
Phe
GAA
[ENA]
¡û
>W1610000588
ABFP01000001
Euryarchaeota
Methanococcus maripaludis C6 [ABFP]
63488
63414
-
Phe
GAA
[ENA]
¡û
>W1610000589
ABHB01000001
Euryarchaeota
Methanococcus voltae A3 [ABHB]
111793
111868
+
Phe
GAA
[ENA]
¡û
Identical group No.301876 (2 seq.)
>A171002332
CP002792
Euryarchaeota
Methanothermococcus okinawensis IH1 [CP002792]
819799
819874
+
Phe
GAA
-
¡û
>W1610002115
AEDA01000001
Euryarchaeota
Methanothermococcus okinawensis IH1 [AEDA]
52535
52610
+
Phe
GAA
[ENA]
¡û
Identical group No.301884 (2 seq.)
>A171002816
CP003117
Euryarchaeota
Methanothrix harundinacea 6Ac [CP003117]
282010
281936
-
Phe
GAA
-
¡û
>W1610945947
LUYF01000054
Euryarchaeota
Methanosarcinales archaeon Methan_02 [LUYF]
1963
1887
-
Phe
GAA
[ENA]
¡û
Identical group No.322030 (2 seq.)
>A171005698
CP009552
Euryarchaeota
Geoglobus acetivorans SBH6 [CP009552]
283305
283232
-
Phe
GAA
-
¡û
>A171006129
CP011267
Euryarchaeota
Geoglobus ahangari 234 [CP011267]
1164895
1164822
-
Phe
GAA
-
¡û
Identical group No.336254 (8 seq.)
>A171001443
CP001994
Euryarchaeota
Methanohalophilus mahii DSM 5219 [CP001994]
765537
765613
+
Phe
GAA
-
¡û
>A171006806
CP017921
Euryarchaeota
Methanohalophilus halophilus Z-7982 [CP017921]
1959184
1959108
-
Phe
GAA
-
¡û
>W1910228317
FNMU01000002
Euryarchaeota
Methanohalophilus halophilus Z-7982 [FNMU]
342760
342684
-
Phe
GAA
[ENA]
¡û
>W1910230578
FOUJ01000003
Euryarchaeota
Methanolobus profundi Mob M [FOUJ]
166580
166505
-
Phe
GAA
[ENA]
¡û
>W1910471809
FXBN01000001
Euryarchaeota
Methanohalophilus portucalensis FDF-1 [FXBN]
214864
214788
-
Phe
GAA
[ENA]
¡û
>W1910582960
JWTK01000001
Euryarchaeota
Methanohalophilus portucalensis FDF-1 [JWTK]
214788
214712
-
Phe
GAA
[ENA]
¡û
>W1911653227
QBKB01000002
Euryarchaeota
Methanohalophilus profundi SLHTYRO [QBKB]
192233
192157
-
Phe
GAA
[ENA]
¡û
>W1610919872
LSRU01000084
Euryarchaeota
Methanohalophilus sp. T328-1 [LSRU]
5936
5860
-
Phe
GAA
[ENA]
¡û
Identical group No.338122 (2 seq.)
>A171001776
CP002117
Euryarchaeota
Methanolacinia petrolearia DSM 11571 [CP002117]
1830110
1830036
-
Phe
GAA
-
¡û
>W1610029777
AXDV01000030
Euryarchaeota
Methanolacinia paynteri DSM 2545 [AXDV]
88037
88111
+
Phe
GAA
[ENA]
¡û
Identical group No.349679 (9 seq.)
>A171002190
CP002670
Euryarchaeota
Pyrococcus sp. NA2 [CP002670]
609483
609407
-
Phe
GAA
-
¡û
>A171002308
CP002779
Euryarchaeota
Pyrococcus yayanosii CH1 [CP002779]
1255947
1255871
-
Phe
GAA
-
¡û
>A171003256
CP003534
Euryarchaeota
Pyrococcus sp. ST04 [CP003534]
153855
153931
+
Phe
GAA
-
¡û
>A171003356
CP003685
Euryarchaeota
Pyrococcus furiosus COM1 [CP003685]
1417396
1417472
+
Phe
GAA
-
¡û
>A171005873
CP010835
Euryarchaeota
Pyrococcus kukulkanii NCB100 [CP010835]
1242653
1242729
+
Phe
GAA
-
¡û
>A171007534
LN999010
Euryarchaeota
Thermococcus chitonophagus [LN999010]
145766
145690
-
Phe
GAA
-
¡û
>At1806
AL096836
Euryarchaeota
Pyrococcus abyssi [AL096836]
150080
150004
-
Phe
GAA
[Ensembl]
¡û
>At1845
AE009950
Euryarchaeota
Pyrococcus furiosus DSM 3638 [AE009950]
77821
77745
-
Phe
GAA
[Ensembl]
¡û
>At1891
BA000001
Euryarchaeota
Pyrococcus horikoshii OT3 [BA000001]
127251
127175
-
Phe
GAA
[Ensembl]
¡û
Identical group No.361335 (2 seq.)
>A171001489
CP002009
Euryarchaeota
Methanocaldococcus infernus ME [CP002009]
1156164
1156090
-
Phe
GAA
-
¡û
>W1610001154
ACQY01000017
Euryarchaeota
Methanocaldococcus infernus ME [ACQY]
625
549
-
Phe
GAA
[ENA]
¡û
Identical group No.372609 (1 seq.)
>A171001793
CP002278
Euryarchaeota
Methanothermus fervidus DSM 2088 [CP002278]
199675
199751
+
Phe
GAA
-
¡û
Identical group No.372734 (1 seq.)
>A171006419
CP012986
Euryarchaeota
Nanohaloarchaea archaeon SG9 [CP012986]
15677
15602
-
Phe
GAA
-
¡û
Identical group No.382810 (1 seq.)
>At1324
AE009439
Euryarchaeota
Methanopyrus kandleri AV19 [AE009439]
1639188
1639080
-
Phe
GAA
[Ensembl]
¡û
Identical group No.407502 (1 seq.)
>A171002854
CP003167
Euryarchaeota
Methanoregula formicica SMSP [CP003167]
1222414
1222340
-
Phe
GAA
-
¡û
Identical group No.422931 (1 seq.)
>A171003684
CP005290
Euryarchaeota
Archaeoglobus sulfaticallidus PM70-1 [CP005290]
344417
344340
-
Phe
GAA
-
¡û
Identical group No.440183 (1 seq.)
>A171002124
CP002588
Euryarchaeota
Archaeoglobus veneficus SNP6 [CP002588]
756684
756607
-
Phe
GAA
-
¡û
Identical group No.485127 (5 seq.)
>A171001736
CP002101
Euryarchaeota
Methanosalsum zhilinae DSM 4017 [CP002101]
890531
890459
-
Phe
GAA
-
¡û
>W1910226811
FNCA01000001
Euryarchaeota
Methanolobus vulcani PL 12/M [FNCA]
176588
176514
-
Phe
GAA
[ENA]
¡û
>W1911581799
PGGK01000001
Euryarchaeota
Methanolobus halotolerans SY-01 [PGGK]
237603
237677
+
Phe
GAA
[ENA]
¡û
>W1610032597
AZAJ01000001
Euryarchaeota
Methanolobus tindarius DSM 2278 [AZAJ]
2615324
2615399
+
Phe
GAA
[ENA]
¡û
>W1610919913
LSRV01000058
Euryarchaeota
Methanolobus sp. T82-4 [LSRV]
12631
12706
+
Phe
GAA
[ENA]
¡û
Identical group No.485717 (2 seq.)
>A171006565
CP014265
Euryarchaeota
Methanobrevibacter olleyae YLM1 [CP014265]
1391660
1391587
-
Phe
GAA
-
¡û
>W1910230533
FOTL01000003
Euryarchaeota
Methanobrevibacter olleyae DSM 16632 [FOTL]
653
726
+
Phe
GAA
[ENA]
¡û
Identical group No.563452 (2 seq.)
>At1346
CP000477
Euryarchaeota
Methanothrix thermoacetophila PT [CP000477]
1300960
1301032
+
Phe
GAA
[Ensembl]
¡û
>W1610000215
AAOR01000001
Euryarchaeota
Methanothrix thermoacetophila PT [AAOR]
563180
563105
-
Phe
GAA
[ENA]
¡û
Identical group No.603270 (1 seq.)
>A171001640
CP002069
Euryarchaeota
Methanohalobium evestigatum Z-7303 [CP002069]
727067
726994
-
Phe
GAA
-
¡û
Identical group No.726161 (7 seq.)
>A171005115
CP009513
Euryarchaeota
Methanosarcina mazei LYC [CP009513]
1438443
1438369
-
Phe
GAA
-
¡û
>A171005368
CP009518
Euryarchaeota
Methanococcoides methylutens MM1 [CP009518]
701852
701923
+
Phe
GAA
-
¡û
>W1910569395
JJOU01000087
Euryarchaeota
Methanosarcina mazei 2.F.T.2.6 [JJOU]
19756
19830
+
Phe
GAA
[ENA]
¡û
>W1910570383
JJPN01000144
Euryarchaeota
Methanosarcina mazei 3.H.A.1A.2 [JJPN]
30336
30262
-
Phe
GAA
[ENA]
¡û
>W1910570528
JJPQ01000103
Euryarchaeota
Methanosarcina mazei 3.H.A.2.5 [JJPQ]
29731
29805
+
Phe
GAA
[ENA]
¡û
>W1910570923
JJPY01000064
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.1 [JJPY]
54819
54893
+
Phe
GAA
[ENA]
¡û
>W1910570995
JJPZ01000158
Euryarchaeota
Methanosarcina mazei 3.H.T.1A.2 [JJPZ]
34810
34736
-
Phe
GAA
[ENA]
¡û
Identical group No.734344 (1 seq.)
>A171006887
CP019067
Euryarchaeota
Halorientalis sp. IM1011 [CP019067]
2241720
2241649
-
Phe
GAA
-
¡û
Identical group No.775767 (1 seq.)
>A171000958
CP001719
Euryarchaeota
Methanobrevibacter ruminantium M1 [CP001719]
362799
362726
-
Phe
GAA
-
¡û
Identical group No.780376 (3 seq.)
>A171000433
CP001365
Euryarchaeota
Halorubrum lacusprofundi ATCC 49239 [CP001365, CP001366]
756256
756328
+
Phe
GAA
-
¡û
>W1910749478
MJCD01000001
Euryarchaeota
Halorubrum lacusprofundi HLS1 [MJCD]
163473
163401
-
Phe
GAA
[ENA]
¡û
>W1610000503
ABEB01000002
Euryarchaeota
Halorubrum lacusprofundi ATCC 49239 [ABEB]
260095
260023
-
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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