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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Euryarchaeota
Anticodon = TTT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.406697 (4 seq.)
>At0792
AY596298
Euryarchaeota
Haloarcula marismortui ATCC 43049 [AY596297, AY596298]
95036
95109
+
Lys
TTT
[Ensembl]
¡û
>PL191001357
CP039136
Euryarchaeota
Haloarcula marismortui ATCC 43049 plasmid:pHMA288 (CP039136)
188424
188498
+
Lys
TTT
[ENA]
¡û
>W1911682242
QKMU01000002
Euryarchaeota
Halogeometricum sp. wsp3 [QKMU]
92074
92148
+
Lys
TTT
[ENA]
¡û
>W1610014202
AOLR01000066
Euryarchaeota
Haloarcula sinaiiensis ATCC 33800 [AOLR]
3232
3158
-
Pseudo
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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