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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwFormaldehyde_C1
Anticodon = CAC
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.441270 (2 seq.)
>ENV09000222
ABSN01033771
Freshwater sediment metagenome lwFormaldehyde_C1
769
693
-
Val
CAC
[ENA]
¡û
>ENV09000774
ABSP01033492
Freshwater sediment metagenome lwMethane_C1
481
405
-
Val
CAC
[ENA]
¡û
Identical group No.447036 (1 seq.)
>ENV09000349
ABSN01056543
Freshwater sediment metagenome lwFormaldehyde_C1
432
359
-
Val
CAC
[ENA]
¡û
Identical group No.776225 (1 seq.)
>ENV09000006
ABSN01000263
Freshwater sediment metagenome lwFormaldehyde_C1
765
691
-
Val
CAC
[ENA]
¡û
Identical group No.776240 (1 seq.)
>ENV09000357
ABSN01057511
Freshwater sediment metagenome lwFormaldehyde_C1
569
495
-
Val
CAC
[ENA]
¡û
Identical group No.835748 (1 seq.)
>ENV09000117
ABSN01013657
Freshwater sediment metagenome lwFormaldehyde_C1
362
292
-
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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