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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwFormaldehyde_C1
Anticodon = GCT
HIT:
13 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.6556 (5 seq.)
>W1711585379
MNZQ01000100
Thermodesulfobacteriota
Syntrophaceae bacterium CG2_30_58_14 [MNZQ]
25947
26041
+
Ser
GCT
[ENA]
¡û
>WENV170006336
AMWB02016711
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
95
1
-
Ser
GCT
[ENA]
¢þ
>WENV170671483
LAHU01065067
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
50
144
+
Ser
GCT
[ENA]
¢þ
>WENV170976011
MTKZ01003817
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
7602
7508
-
Ser
GCT
[ENA]
¢þ
>ENV09000075
ABSN01006024
Freshwater sediment metagenome lwFormaldehyde_C1
646
740
+
Ser
GCT
[ENA]
¡û
Identical group No.8443 (5 seq.)
>W131163872
ARAC01000001
Betaproteobacteria
Methylophilus sp. 42 [ARAC]
1026860
1026953
+
Ser
GCT
[ENA]
¡û
>W131170279
ARFK01000004
Betaproteobacteria
Methylophilus sp. 1 [ARFK]
447751
447844
+
Ser
GCT
[ENA]
¡û
>W141231893
BAUS01000002
Betaproteobacteria
Methylophilus sp. OH31 [BAUS]
443909
444002
+
Ser
GCT
[ENA]
¡û
>ENV09000016
ABSN01000619
Freshwater sediment metagenome lwFormaldehyde_C1
577
670
+
Ser
GCT
[ENA]
¡û
>W1511433419
JUHE01000001
Betaproteobacteria
Methylophilus sp. Q8 [JUHE]
175575
175482
-
Ser
GCT
[ENA]
¡û
Identical group No.12104 (1 seq.)
>ENV09000304
ABSN01047592
Freshwater sediment metagenome lwFormaldehyde_C1
339
246
-
Ser
GCT
[ENA]
¡û
Identical group No.12105 (1 seq.)
>ENV09000328
ABSN01052868
Freshwater sediment metagenome lwFormaldehyde_C1
42
135
+
Ser
GCT
[ENA]
¡û
Identical group No.12106 (1 seq.)
>ENV09000410
ABSN01065735
Freshwater sediment metagenome lwFormaldehyde_C1
297
388
+
Ser
GCT
[ENA]
¡û
Identical group No.19645 (1 seq.)
>ENV09000001
ABSN01000012
Freshwater sediment metagenome lwFormaldehyde_C1
696
604
-
Ser
GCT
[ENA]
¡û
Identical group No.19646 (1 seq.)
>ENV09000106
ABSN01011520
Freshwater sediment metagenome lwFormaldehyde_C1
572
661
+
Ser
GCT
[ENA]
¡û
Identical group No.19647 (1 seq.)
>ENV09000162
ABSN01020870
Freshwater sediment metagenome lwFormaldehyde_C1
519
429
-
Ser
GCT
[ENA]
¡û
Identical group No.19649 (1 seq.)
>ENV09000366
ABSN01058483
Freshwater sediment metagenome lwFormaldehyde_C1
598
506
-
Ser
GCT
[ENA]
¡û
Identical group No.26801 (12 seq.)
>W1711081798
LSTC01000024
Nitrospirota
Nitrospira sp. SCGC AG-212-E16 [LSTC]
30029
30120
+
Ser
GCT
[ENA]
¡û
>WENV180247524
OBEQ010036980
[OBEQ] groundwater metagenome; groundwater
65054
64963
-
Ser
GCT
[ENA]
¢þ
>WENV181184933
OEKW01000613
[OEKW] metagenome; 1998
14363
14272
-
Ser
GCT
[ENA]
¢þ
>WENV183694791
ORMF012291212
[ORMF] groundwater metagenome; groundwater
111
20
-
Ser
GCT
[ENA]
¢þ
>WENV170555405
CXWL01000491
[CXWL] groundwater metagenome; biofilm material
23167
23076
-
Ser
GCT
[ENA]
¢þ
>WENV170555614
CXWL01001428
[CXWL] groundwater metagenome; biofilm material
20800
20891
+
Ser
GCT
[ENA]
¢þ
>WENV170555615
CXWL01001429
[CXWL] groundwater metagenome; biofilm material
5190
5281
+
Ser
GCT
[ENA]
¢þ
>WENV170555616
CXWL01001430
[CXWL] groundwater metagenome; biofilm material
917
1008
+
Ser
GCT
[ENA]
¢þ
>WENV170557338
CXWL01024441
[CXWL] groundwater metagenome; biofilm material
4856
4765
-
Ser
GCT
[ENA]
¢þ
>WENV170557913
CXWL01042452
[CXWL] groundwater metagenome; biofilm material
1863
1954
+
Ser
GCT
[ENA]
¢þ
>ENV09000029
ABSN01001706
Freshwater sediment metagenome lwFormaldehyde_C1
201
292
+
Ser
GCT
[ENA]
¡û
>W1610920633
LSTC01000024
Nitrospirota
Nitrospira sp. SCGC AG-212-E16 [LSTC]
30029
30120
+
Ser
GCT
[ENA]
¡û
Identical group No.30021 (1 seq.)
>ENV09000236
ABSN01035868
Freshwater sediment metagenome lwFormaldehyde_C1
729
820
+
Ser
GCT
[ENA]
¡û
Identical group No.56419 (3 seq.)
>WENV180275160
OBHS01029045
[OBHS] metagenome; freshwater sediment
110
198
+
Ser
GCT
[ENA]
¢þ
>CHL1810008352
KC509523
Stramenopiles
Didymosphenia geminata BCC011 (KC509523)
17744
17833
+
Ser
GCT
[ENA]
¡û
>ENV09000025
ABSN01001437
Freshwater sediment metagenome lwFormaldehyde_C1
563
477
-
Ser
GCT
[ENA]
¡û
Identical group No.72031 (1 seq.)
>ENV09000419
ABSN01066418
Freshwater sediment metagenome lwFormaldehyde_C1
712
801
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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