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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwFormaldehyde_C1
Anticodon = TCA
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.577 (1 seq.)
>ENV09000400
ABSN01064320
Freshwater sediment metagenome lwFormaldehyde_C1
681
586
-
SeC
TCA
[ENA]
¡û
Identical group No.3294 (1 seq.)
>ENV09000449
ABSN01071454
Freshwater sediment metagenome lwFormaldehyde_C1
200
296
+
SeC
TCA
[ENA]
¡û
Identical group No.6846 (2 seq.)
>W1911385657
NVQC01000039
Unclassified
Candidatus Methylomirabilis limnetica limnetica Zug [NVQC]
3715
3809
+
Sec
TCA
[ENA]
¡û
>ENV09000018
ABSN01000624
Freshwater sediment metagenome lwFormaldehyde_C1
693
783
+
SeC
TCA
[ENA]
¡û
Identical group No.835760 (1 seq.)
>ENV09000371
ABSN01058912
Freshwater sediment metagenome lwFormaldehyde_C1
297
370
+
SeC
TCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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