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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwFormate_C1
Anticodon = CTC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.378480 (4 seq.)
>WENV183724245
PJQE01003036
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
3175
3248
+
Glu
CTC
[ENA]
¢þ
>WENV183725178
PJQE01184910
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
76
3
-
Glu
CTC
[ENA]
¢þ
>WENV170653728
JRYJ01060194
[JRYJ] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
465
541
+
Glu
CTC
[ENA]
¢þ
>ENV09000527
ABSO01013645
Freshwater sediment metagenome lwFormate_C1
12
85
+
Glu
CTC
[ENA]
¡û
Identical group No.492412 (19 seq.)
>WENV180019862
FTCS01000228
[FTCS] metagenome; soil
2451
2524
+
Glu
CTC
[ENA]
¢þ
>WENV180038730
LLBY010004066
[LLBY] soil metagenome; soil from tomato rhizosphere
1900
1828
-
Glu
CTC
[ENA]
¢þ
>WENV180039405
LLBY010064603
[LLBY] soil metagenome; soil from tomato rhizosphere
1669
1597
-
Glu
CTC
[ENA]
¢þ
>WENV180039442
LLBY010070898
[LLBY] soil metagenome; soil from tomato rhizosphere
8
80
+
Glu
CTC
[ENA]
¢þ
>WENV180041387
LLBZ010116117
[LLBZ] soil metagenome; soil from tomato rhizosphere
7
79
+
Glu
CTC
[ENA]
¢þ
>WENV180690411
OCZS010005605
[OCZS] soil metagenome; soil
3881
3953
+
Glu
CTC
[ENA]
¢þ
>WENV181184749
OEKP01000808
[OEKP] metagenome; 1998
6840
6768
-
Glu
CTC
[ENA]
¢þ
>WENV183661435
ORJL010108687
[ORJL] groundwater metagenome; groundwater
1197
1270
+
Glu
CTC
[ENA]
¢þ
>WENV183669509
ORJL010848970
[ORJL] groundwater metagenome; groundwater
11318
11246
-
Glu
CTC
[ENA]
¢þ
>WENV183671991
ORJL011124370
[ORJL] groundwater metagenome; groundwater
1563
1491
-
Glu
CTC
[ENA]
¢þ
>WENV183675739
ORJL011544321
[ORJL] groundwater metagenome; groundwater
75
3
-
Glu
CTC
[ENA]
¢þ
>WENV183677775
ORJL011798409
[ORJL] groundwater metagenome; groundwater
74
2
-
Glu
CTC
[ENA]
¢þ
>WENV183679732
ORMF010099237
[ORMF] groundwater metagenome; groundwater
216
144
-
Glu
CTC
[ENA]
¢þ
>WENV183680199
ORMF010149588
[ORMF] groundwater metagenome; groundwater
363
290
-
Glu
CTC
[ENA]
¢þ
>WENV183690486
ORMF011606868
[ORMF] groundwater metagenome; groundwater
1963
2035
+
Glu
CTC
[ENA]
¢þ
>WENV183724773
PJQE01064866
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
108
181
+
Glu
CTC
[ENA]
¢þ
>WENV170566371
FKKE01020588
[FKKE] freshwater metagenome; freshwater
1519
1446
-
Glu
CTC
[ENA]
¢þ
>W1810784108
QQZY01000002
Actinomycetota
Gaiella occulta F2-233 [QQZY]
118115
118041
-
Glu
CTC
[ENA]
¡û
>ENV09000524
ABSO01013385
Freshwater sediment metagenome lwFormate_C1
212
284
+
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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