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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwMethenol_C1
Anticodon = TCC
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.408590 (1 seq.)
>ENV09001015
ABSQ01016216
Freshwater sediment metagenome lwMethenol_C1
130
206
+
Gly
TCC
[ENA]
¡û
Identical group No.537978 (5 seq.)
>W1911385596
NVQB01000001
Bacteroidota
Sphingobacteriaceae bacterium SH-48 [NVQB]
4809982
4809907
-
Gly
TCC
[ENA]
¡û
>SRA1003675
SRR002327.113312
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
180
105
-
Gly
TCC
[SRA]
>SRA1004297
SRR002328.255095
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
173
248
+
Gly
TCC
[SRA]
>ENV09000214
ABSN01031530
Freshwater sediment metagenome lwFormaldehyde_C1
286
213
-
Gly
TCC
[ENA]
¡û
>ENV09001181
ABSQ01044388
Freshwater sediment metagenome lwMethenol_C1
463
538
+
Gly
TCC
[ENA]
¡û
Identical group No.604469 (3 seq.)
>WENV170961458
MLJW01000054
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
41848
41773
-
Gly
TCC
[ENA]
¢þ
>ENV09001044
ABSQ01021434
Freshwater sediment metagenome lwMethenol_C1
309
234
-
Gly
TCC
[ENA]
¡û
>C10109341
CP002056
Betaproteobacteria
Methylotenera versatilis 301 [CP002056]
357536
357611
+
Gly
TCC
[Ensembl]
¡û
Identical group No.689322 (13 seq.)
>W1711391149
MEKI01000160
Acidobacteriota
Acidobacteria bacterium RBG_13_68_16 [MEKI]
48138
48212
+
Gly
TCC
[ENA]
¡û
>WENV180026690
FTIU01023499
[FTIU] metagenome; soil
529
455
-
Gly
TCC
[ENA]
¢þ
>WENV180028329
FTJA01096835
[FTJA] metagenome; soil
263
189
-
Gly
TCC
[ENA]
¢þ
>WENV180094877
MTBK01036647
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
19053
18979
-
Gly
TCC
[ENA]
¢þ
>WENV180284631
OBID01073795
[OBID] metagenome; sludge
421
347
-
Gly
TCC
[ENA]
¢þ
>WENV180304544
OBJI01117670
[OBJI] soil metagenome; soil
6
80
+
Gly
TCC
[ENA]
¢þ
>WENV180331345
OBLA01008310
[OBLA] soil metagenome; Alaskan Permafrost
185
111
-
Gly
TCC
[ENA]
¢þ
>WENV181155580
OEID01268485
[OEID] soil metagenome; soil
172
98
-
Gly
TCC
[ENA]
¢þ
>WENV183092494
OLLE01000325
[OLLE] soil metagenome; soil
16536
16610
+
Gly
TCC
[ENA]
¢þ
>WENV170557673
CXWL01033478
[CXWL] groundwater metagenome; biofilm material
1625
1551
-
Gly
TCC
[ENA]
¢þ
>WENV170771528
LXNI01001790
[LXNI] sponge metagenome; marine sponge reef
8907
8981
+
Gly
TCC
[ENA]
¢þ
>W141696047
JMFG01000037
Acidobacteriota
Thermoanaerobaculum aquaticum [JMFG]
271
197
-
Gly
TCC
[ENA]
¡û
>ENV09001130
ABSQ01036855
Freshwater sediment metagenome lwMethenol_C1
597
671
+
Gly
TCC
[ENA]
¡û
Identical group No.797826 (6 seq.)
>WENV183661793
ORJL010136987
[ORJL] groundwater metagenome; groundwater
817
744
-
Gly
TCC
[ENA]
¢þ
>WENV183689170
ORMF011399431
[ORMF] groundwater metagenome; groundwater
3589
3516
-
Gly
TCC
[ENA]
¢þ
>WENV170176600
CEOS01097897
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
466
539
+
Gly
TCC
[ENA]
¢þ
>ENV09000845
ABSP01048807
Freshwater sediment metagenome lwMethane_C1
329
256
-
Gly
TCC
[ENA]
¡û
>ENV09001247
ABSQ01055635
Freshwater sediment metagenome lwMethenol_C1
403
476
+
Gly
TCC
[ENA]
¡û
>WENV077955
AAFX01135146
Soil microbial communities from Minnesota Farm
169
242
+
Gly
TCC
[ENA]
Identical group No.821268 (1 seq.)
>ENV09000922
ABSQ01000220
Freshwater sediment metagenome lwMethenol_C1
778
851
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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