This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Freshwater sediment metagenome lwMethylamine_C1
Anticodon = TGG
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.268731 (1 seq.)
>ENV09001588
ABSR01033912
Freshwater sediment metagenome lwMethylamine_C1
199
122
-
Pro
TGG
[ENA]
¡û
Identical group No.303514 (43 seq.)
>W131164720
ARBA01000001
Betaproteobacteria
Methylotenera mobilis 13 [ARBA]
100983
100907
-
Pro
TGG
[ENA]
¡û
>W131164748
ARBA01000003
Betaproteobacteria
Methylotenera mobilis 13 [ARBA]
660413
660337
-
Pro
TGG
[ENA]
¡û
>W131186205
ARVX01000001
Betaproteobacteria
Methylotenera versatilis 79 [ARVX]
674636
674560
-
Pro
TGG
[ENA]
¡û
>W131186567
ARWF01000001
Betaproteobacteria
Methylotenera sp. 73s [ARWF]
1554106
1554030
-
Pro
TGG
[ENA]
¡û
>WENV180099060
MTBK01284931
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
1223
1299
+
Pro
TGG
[ENA]
¢þ
>WENV181189049
OEOF01000037
[OEOF] activated sludge metagenome; Activated Sludge
13228
13304
+
Pro
TGG
[ENA]
¢þ
>WENV181379712
OFRD01006614
[OFRD] wastewater metagenome; Exp Tend CN 100WW
337
261
-
Pro
TGG
[ENA]
¢þ
>WENV170558762
CXWL01088777
[CXWL] groundwater metagenome; biofilm material
1698
1774
+
Pro
TGG
[ENA]
¢þ
>WENV170577504
FSSH01000094
[FSSH] freshwater metagenome; drinking water
10629
10705
+
Pro
TGG
[ENA]
¢þ
>WENV170705460
LNAO01000611
[LNAO] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1576
1500
-
Pro
TGG
[ENA]
¢þ
>WENV170705833
LNAP01000436
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
48368
48292
-
Pro
TGG
[ENA]
¢þ
>WENV170707068
LNAP01012147
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
4205
4129
-
Pro
TGG
[ENA]
¢þ
>WENV170708647
LNAP01100863
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
31
107
+
Pro
TGG
[ENA]
¢þ
>WENV170710976
LNFM01003165
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
32981
32905
-
Pro
TGG
[ENA]
¢þ
>WENV170961526
MLJW01000110
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
84457
84533
+
Pro
TGG
[ENA]
¢þ
>WENV170961610
MLJW01000232
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
30930
30854
-
Pro
TGG
[ENA]
¢þ
>W141819346
JQMG01000001
Betaproteobacteria
Methylotenera sp. L2L1 [JQMG]
955862
955938
+
Pro
TGG
[ENA]
¡û
>W141819351
JQMG01000001
Betaproteobacteria
Methylotenera sp. L2L1 [JQMG]
1091141
1091217
+
Pro
TGG
[ENA]
¡û
>W1910730041
MHBU01000029
Betaproteobacteria
Methylotenera sp. RIFCSPLOWO2_02_FULL_45_14 [MHBU]
22515
22591
+
Pro
TGG
[ENA]
¡û
>C09107776
CP001672
Betaproteobacteria
Methylotenera mobilis JLW8 [CP001672]
127754
127830
+
Pro
TGG
[Ensembl]
¡û
>C09107779
CP001672
Betaproteobacteria
Methylotenera mobilis JLW8 [CP001672]
239293
239369
+
Pro
TGG
[Ensembl]
¡û
>W1911623983
PQVH01000006
Betaproteobacteria
Methylotenera oryzisoli La3113 [PQVH]
88896
88820
-
Pro
TGG
[ENA]
¡û
>W1911623996
PQVH01000010
Betaproteobacteria
Methylotenera oryzisoli La3113 [PQVH]
99462
99386
-
Pro
TGG
[ENA]
¡û
>ENV09000758
ABSP01031374
Freshwater sediment metagenome lwMethane_C1
324
400
+
Pro
TGG
[ENA]
¡û
>ENV09001141
ABSQ01037617
Freshwater sediment metagenome lwMethenol_C1
405
481
+
Pro
TGG
[ENA]
¡û
>ENV09001282
ABSR01000169
Freshwater sediment metagenome lwMethylamine_C1
555
631
+
Pro
TGG
[ENA]
¡û
>ENV09001304
ABSR01000873
Freshwater sediment metagenome lwMethylamine_C1
1364
1288
-
Pro
TGG
[ENA]
¡û
>ENV09001312
ABSR01001194
Freshwater sediment metagenome lwMethylamine_C1
2136
2212
+
Pro
TGG
[ENA]
¡û
>ENV09001322
ABSR01001345
Freshwater sediment metagenome lwMethylamine_C1
1380
1304
-
Pro
TGG
[ENA]
¡û
>ENV09001326
ABSR01001481
Freshwater sediment metagenome lwMethylamine_C1
4194
4270
+
Pro
TGG
[ENA]
¡û
>ENV09001343
ABSR01002296
Freshwater sediment metagenome lwMethylamine_C1
823
747
-
Pro
TGG
[ENA]
¡û
>ENV09001348
ABSR01002410
Freshwater sediment metagenome lwMethylamine_C1
664
740
+
Pro
TGG
[ENA]
¡û
>ENV09001364
ABSR01003424
Freshwater sediment metagenome lwMethylamine_C1
26
102
+
Pro
TGG
[ENA]
¡û
>ENV09001370
ABSR01003714
Freshwater sediment metagenome lwMethylamine_C1
1410
1334
-
Pro
TGG
[ENA]
¡û
>ENV09001390
ABSR01004580
Freshwater sediment metagenome lwMethylamine_C1
4059
4135
+
Pro
TGG
[ENA]
¡û
>ENV09001424
ABSR01006578
Freshwater sediment metagenome lwMethylamine_C1
1090
1014
-
Pro
TGG
[ENA]
¡û
>ENV09001471
ABSR01013550
Freshwater sediment metagenome lwMethylamine_C1
266
190
-
Pro
TGG
[ENA]
¡û
>ENV09001533
ABSR01025017
Freshwater sediment metagenome lwMethylamine_C1
10
86
+
Pro
TGG
[ENA]
¡û
>C10109336
CP002056
Betaproteobacteria
Methylotenera versatilis 301 [CP002056]
163400
163476
+
Pro
TGG
[Ensembl]
¡û
>C10109361
CP002056
Betaproteobacteria
Methylotenera versatilis 301 [CP002056]
2954670
2954594
-
Pro
TGG
[Ensembl]
¡û
>W1511432014
JUGF01000002
Betaproteobacteria
Methylotenera versatilis 7 [JUGF]
838327
838403
+
Pro
TGG
[ENA]
¡û
>W1511433534
JUHH01000001
Betaproteobacteria
Methylotenera sp. G11 [JUHH]
1954368
1954444
+
Pro
TGG
[ENA]
¡û
>W1511433551
JUHH01000001
Betaproteobacteria
Methylotenera sp. G11 [JUHH]
1727839
1727763
-
Pro
TGG
[ENA]
¡û
Identical group No.310060 (10 seq.)
>W1710798311
LJTI01000019
Gammaproteobacteria
Gammaproteobacteria bacterium SG8_31 [LJTI]
43566
43642
+
Pro
TGG
[ENA]
¡û
>WENV180017079
FSWL01000051
[FSWL] metagenome; soil
7214
7290
+
Pro
TGG
[ENA]
¢þ
>WENV180039573
LLBY010095808
[LLBY] soil metagenome; soil from tomato rhizosphere
2571
2495
-
Pro
TGG
[ENA]
¢þ
>WENV180591207
OCOV01003796
[OCOV] marine metagenome; ENVO:01000301
957
881
-
Pro
TGG
[ENA]
¢þ
>WENV180691557
OCZS010151771
[OCZS] soil metagenome; soil
258
334
+
Pro
TGG
[ENA]
¢þ
>WENV170771810
LXNI01004422
[LXNI] sponge metagenome; marine sponge reef
307
231
-
Pro
TGG
[ENA]
¢þ
>WENV170959717
MKWU01007427
[MKWU] sponge metagenome;
6948
7024
+
Pro
TGG
[ENA]
¢þ
>ENV09001215
ABSQ01051039
Freshwater sediment metagenome lwMethenol_C1
239
315
+
Pro
TGG
[ENA]
¡û
>ENV09001503
ABSR01019714
Freshwater sediment metagenome lwMethylamine_C1
346
422
+
Pro
TGG
[ENA]
¡û
>W1610662268
LJTI01000019
Gammaproteobacteria
Gammaproteobacteria bacterium SG8_31 [LJTI]
43566
43642
+
Pro
TGG
[ENA]
¡û
Identical group No.430987 (2 seq.)
>W131231755
AUIS01000001
Acidithiobacillia
Thermithiobacillus tepidarius DSM 3134 [AUIS]
70712
70636
-
Pro
TGG
[ENA]
¡û
>ENV09001576
ABSR01032828
Freshwater sediment metagenome lwMethylamine_C1
134
210
+
Pro
TGG
[ENA]
¡û
Identical group No.436598 (2 seq.)
>WENV183680513
ORMF010192645
[ORMF] groundwater metagenome; groundwater
6133
6209
+
Pro
TGG
[ENA]
¢þ
>ENV09001521
ABSR01024205
Freshwater sediment metagenome lwMethylamine_C1
692
616
-
Pro
TGG
[ENA]
¡û
Identical group No.441297 (1 seq.)
>ENV09001454
ABSR01010455
Freshwater sediment metagenome lwMethylamine_C1
162
236
+
Pro
TGG
[ENA]
¡û
Identical group No.441299 (1 seq.)
>ENV09001477
ABSR01015080
Freshwater sediment metagenome lwMethylamine_C1
141
68
-
Pro
TGG
[ENA]
¡û
Identical group No.441300 (1 seq.)
>ENV09001495
ABSR01018752
Freshwater sediment metagenome lwMethylamine_C1
701
625
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK