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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hot springs metagenome ctg_1106426165452
Anticodon = CGC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.274411 (34 seq.)
>A171000540
CP001399
Thermoproteota
Sulfolobus islandicus L.S.2.15 [CP001399]
1175618
1175543
-
Ala
CGC
-
¡û
>A171000567
CP001400
Thermoproteota
Sulfolobus islandicus M.14.25 [CP001400]
1099421
1099346
-
Ala
CGC
-
¡û
>A171000594
CP001401
Thermoproteota
Sulfolobus islandicus M.16.27 [CP001401]
1191832
1191757
-
Ala
CGC
-
¡û
>A171000621
CP001402
Thermoproteota
Sulfolobus islandicus M.16.4 [CP001402]
1082221
1082146
-
Ala
CGC
-
¡û
>A171000648
CP001403
Thermoproteota
Sulfolobus islandicus Y.G.57.14 [CP001403]
1075104
1075029
-
Ala
CGC
-
¡û
>A171000664
CP001404
Thermoproteota
Sulfolobus islandicus Y.N.15.51 [CP001404]
1492551
1492626
+
Ala
CGC
-
¡û
>A171001052
CP001800
Thermoproteota
Saccharolobus solfataricus [CP001800]
1821728
1821803
+
Ala
CGC
-
¡û
>A171001940
CP002425
Thermoproteota
Sulfolobus islandicus REY15A [CP002425]
992252
992177
-
Ala
CGC
-
¡û
>A171001967
CP002426
Thermoproteota
Sulfolobus islandicus HVE10/4 [CP002426]
1128601
1128526
-
Ala
CGC
-
¡û
>A171003461
CP003928
Thermoproteota
Sulfolobus islandicus LAL14/1 [CP003928]
994265
994190
-
Ala
CGC
-
¡û
>A171005947
CP011055
Thermoproteota
Saccharolobus solfataricus SARC-B [CP011055]
1879908
1879983
+
Ala
CGC
-
¡û
>A171005974
CP011056
Thermoproteota
Saccharolobus solfataricus SARC-C [CP011056]
1879909
1879984
+
Ala
CGC
-
¡û
>A171006001
CP011057
Thermoproteota
Saccharolobus solfataricus SULA [CP011057]
1879926
1880001
+
Ala
CGC
-
¡û
>A171007591
LT549890
Thermoproteota
Saccharolobus solfataricus P1 [LT549890]
935148
935223
+
Ala
CGC
-
¡û
>WENV181229110
OFEJ01000404
[OFEJ] sediment metagenome; Joseph's Coat, Yellowstone National Park, Wyoming, USA
10226
10301
+
Ala
CGC
[ENA]
¢þ
>WENV181406511
OGCG01000360
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
26636
26711
+
Ala
CGC
[ENA]
¢þ
>WENV181407565
OGCG01042758
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
648
721
+
Ala
CGC
[ENA]
¢þ
>At0485
AE006641
Thermoproteota
Saccharolobus solfataricus P2 [AE006641]
915708
915781
+
Ala
CGC
[Ensembl]
¡û
>WENV170668463
LAFJ01004027
[LAFJ] hot springs metagenome; hot springs water enriched for viruses sample NL10_1401_vDNA_Ovation_1.4g/mL
1
77
+
Ala
CGC
[ENA]
¢þ
>W1910568763
JFZT01000039
Thermoproteota
Candidatus Acidianus copahuensis copahuensis ALE1 [JFZT]
13980
13906
-
Ala
CGC
[ENA]
¡û
>ENV09004261
ADKL01000514
Hot springs metagenome ctg_1106426165452
3678
3602
-
Ala
CGC
[ENA]
¡û
>W1610001087
ACQS01000008
Thermoproteota
Saccharolobus solfataricus Feb-98 [ACQS]
10834
10759
-
Ala
CGC
[ENA]
¡û
>W1610001511
ACUK01000046
Thermoproteota
Saccharolobus solfataricus Feb-98 [ACUK]
266
191
-
Ala
CGC
[ENA]
¡û
>W1610004566
AHJK01000001
Thermoproteota
Sulfolobus islandicus M.16.2 [AHJK]
1153871
1153796
-
Ala
CGC
[ENA]
¡û
>W1610004596
AHJL01000005
Thermoproteota
Sulfolobus islandicus M.16.12 [AHJL]
158573
158498
-
Ala
CGC
[ENA]
¡û
>W1610004624
AHJM01000003
Thermoproteota
Sulfolobus islandicus M.16.13 [AHJM]
242321
242246
-
Ala
CGC
[ENA]
¡û
>W1610004653
AHJN01000003
Thermoproteota
Sulfolobus islandicus M.16.22 [AHJN]
159199
159124
-
Ala
CGC
[ENA]
¡û
>W1610004681
AHJO01000001
Thermoproteota
Sulfolobus islandicus M.16.23 [AHJO]
1097638
1097563
-
Ala
CGC
[ENA]
¡û
>W1610004711
AHJP01000004
Thermoproteota
Sulfolobus islandicus M.16.30 [AHJP]
215121
215046
-
Ala
CGC
[ENA]
¡û
>W1610004739
AHJQ01000001
Thermoproteota
Sulfolobus islandicus M.16.40 [AHJQ]
1112960
1112885
-
Ala
CGC
[ENA]
¡û
>W1610004768
AHJR01000001
Thermoproteota
Sulfolobus islandicus M.16.43 [AHJR]
1083160
1083085
-
Ala
CGC
[ENA]
¡û
>W1610004798
AHJS01000002
Thermoproteota
Sulfolobus islandicus M.16.46 [AHJS]
276292
276217
-
Ala
CGC
[ENA]
¡û
>W1610004826
AHJT01000001
Thermoproteota
Sulfolobus islandicus M.16.47 [AHJT]
1139969
1139894
-
Ala
CGC
[ENA]
¡û
>W1610017990
APJY01000001
Thermoproteota
Sulfolobales archaeon Acd1 [APJY]
835676
835752
+
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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