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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hot springs metagenome ctg_1106445192081
Anticodon = CGC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.456538 (72 seq.)
>W1710787551
LJJR01000051
Deinococcota
Thermus scotoductus [LJJR]
3938
4013
+
Ala
CGC
[ENA]
¡û
>C171047206
CP016312
Deinococcota
Thermus brockianus GE-1 [CP016312]
1462126
1462201
+
Ala
CGC
-
¡û
>W131160728
AQWU01000066
Deinococcota
Thermus igniterrae ATCC 700962 [AQWU]
39495
39420
-
Ala
CGC
[ENA]
¡û
>W131167489
ARDI01000001
Deinococcota
Thermus oshimai DSM 12092 [ARDI]
388984
389059
+
Ala
CGC
[ENA]
¡û
>W131177894
ARLD01000066
Deinococcota
Thermus scotoductus DSM 8553 [ARLD]
29160
29235
+
Ala
CGC
[ENA]
¡û
>W131218087
ATXJ01000003
Deinococcota
Thermus islandicus DSM 21543 [ATXJ]
41126
41201
+
Ala
CGC
[ENA]
¡û
>W131231967
AUIW01000013
Deinococcota
Thermus antranikianii DSM 12462 [AUIW]
33418
33343
-
Ala
CGC
[ENA]
¡û
>WENV180012822
FMSI01022490
[FMSI] soil metagenome; Soil
77
2
-
Ala
CGC
[ENA]
¢þ
>WENV180014945
FQKF010229225
[FQKF] soil metagenome; Soil
20
95
+
Ala
CGC
[ENA]
¢þ
>W141080522
ATNI01000075
Deinococcota
Thermus sp. NMX2.A1 [ATNI]
17785
17860
+
Ala
CGC
[ENA]
¡û
>W08011563
ABVK01000001
Deinococcota
Thermus aquaticus Y51MC23 [ABVK]
327709
327784
+
Ala
CGC
[ENA]
¡û
>WENV181404670
OGCB01000023
[OGCB] hot springs metagenome; Octopus Spring Streamers, Yellowstone National Park, Wyoming, USA
13202
13127
-
Ala
CGC
[ENA]
¢þ
>WENV181405362
OGCE01000025
[OGCE] hot springs metagenome; Octopus Spring, Yellowstone National Park, Wyoming, USA
16826
16751
-
Ala
CGC
[ENA]
¢þ
>WENV181407959
OGCH01000292
[OGCH] hot springs metagenome; hot springs
1625
1550
-
Ala
CGC
[ENA]
¢þ
>C191159676
CP038452
Deinococcota
Thermus caldilimi YIM 78456 [CP038452]
2405597
2405672
+
Ala
CGC
-
¡û
>W141818257
JQLJ01000001
Deinococcota
Thermus scotoductus KI2 [JQLJ]
2308015
2308090
+
Ala
CGC
[ENA]
¡û
>W141818292
JQLK01000001
Deinococcota
Thermus tengchongensis YIM 77401 [JQLK]
2198428
2198353
-
Ala
CGC
[ENA]
¡û
>W141820345
JQMV01000003
Deinococcota
Thermus amyloliquefaciens YIM 77409 [JQMV]
536354
536429
+
Ala
CGC
[ENA]
¡û
>W141820768
JQNC01000003
Deinococcota
Thermus caliditerrae [JQNC]
1118991
1118916
-
Ala
CGC
[ENA]
¡û
>W1911578793
PELL01000111
Deinococcota
Thermus scotoductus 39_S39 [PELL]
46012
46087
+
Ala
CGC
[ENA]
¡û
>W1911578869
PELM01000487
Deinococcota
Thermus scotoductus 38_S38 [PELM]
2352
2277
-
Ala
CGC
[ENA]
¡û
>W1911578913
PELN01000369
Deinococcota
Thermus scotoductus 37_S37 [PELN]
27599
27674
+
Ala
CGC
[ENA]
¡û
>W1911578932
PELO01000055
Deinococcota
Thermus scotoductus 35_S35 [PELO]
5891
5816
-
Ala
CGC
[ENA]
¡û
>W1911578971
PELP01000047
Deinococcota
Thermus scotoductus 34_S34 [PELP]
5833
5758
-
Ala
CGC
[ENA]
¡û
>W1911579014
PELP01000581
Deinococcota
Thermus scotoductus 34_S34 [PELP]
2683
2608
-
Ala
CGC
[ENA]
¡û
>W1911579046
PELQ01000222
Deinococcota
Thermus scotoductus 33_S33 [PELQ]
22967
22892
-
Ala
CGC
[ENA]
¡û
>W1911579082
PELR01000111
Deinococcota
Thermus scotoductus 32_S32 [PELR]
53969
54044
+
Ala
CGC
[ENA]
¡û
>W1911579125
PELS01000111
Deinococcota
Thermus scotoductus 31_S31 [PELS]
32689
32614
-
Ala
CGC
[ENA]
¡û
>W1911579178
PELT01000055
Deinococcota
Thermus scotoductus 30_S30 [PELT]
7428
7353
-
Ala
CGC
[ENA]
¡û
>W1911579250
PELU01000437
Deinococcota
Thermus scotoductus 29_S29 [PELU]
5969
6044
+
Ala
CGC
[ENA]
¡û
>W1911579304
PELV01000421
Deinococcota
Thermus scotoductus 28_S28 [PELV]
19309
19384
+
Ala
CGC
[ENA]
¡û
>W1911579339
PELW01000352
Deinococcota
Thermus scotoductus 27_S27 [PELW]
7406
7331
-
Ala
CGC
[ENA]
¡û
>W1911579375
PELX01000111
Deinococcota
Thermus scotoductus 26_S26 [PELX]
33791
33866
+
Ala
CGC
[ENA]
¡û
>W1911579436
PELY01000332
Deinococcota
Thermus scotoductus 25_S25 [PELY]
8429
8354
-
Ala
CGC
[ENA]
¡û
>W1911579484
PELZ01000446
Deinococcota
Thermus scotoductus 24_S24 [PELZ]
2979
2904
-
Ala
CGC
[ENA]
¡û
>W1911579517
PEMA01000283
Deinococcota
Thermus scotoductus 23_S23 [PEMA]
6734
6809
+
Ala
CGC
[ENA]
¡û
>W1911579556
PEMB01000111
Deinococcota
Thermus scotoductus 22_S22 [PEMB]
5867
5792
-
Ala
CGC
[ENA]
¡û
>W1911579599
PEMC01000044
Deinococcota
Thermus scotoductus 21_S21 [PEMC]
7423
7348
-
Ala
CGC
[ENA]
¡û
>W1911579643
PEMD01000033
Deinococcota
Thermus scotoductus 20_S20 [PEMD]
6728
6803
+
Ala
CGC
[ENA]
¡û
>W1911579696
PEME01000099
Deinococcota
Thermus scotoductus 19_S19 [PEME]
7595
7520
-
Ala
CGC
[ENA]
¡û
>W1911579762
PEMF01000331
Deinococcota
Thermus scotoductus 18_S18 [PEMF]
7406
7331
-
Ala
CGC
[ENA]
¡û
>W1911579808
PEMG01000333
Deinococcota
Thermus scotoductus 17_S17 [PEMG]
26575
26650
+
Ala
CGC
[ENA]
¡û
>W1911579874
PEMH01000408
Deinococcota
Thermus scotoductus 16_S16 [PEMH]
18469
18544
+
Ala
CGC
[ENA]
¡û
>W1911579904
PEMI01000373
Deinococcota
Thermus scotoductus 15_S15 [PEMI]
27602
27677
+
Ala
CGC
[ENA]
¡û
>W1911579955
PEMJ01000313
Deinococcota
Thermus scotoductus 14_S14 [PEMJ]
34720
34795
+
Ala
CGC
[ENA]
¡û
>W1911579991
PEMK01000233
Deinococcota
Thermus scotoductus 13_S13 [PEMK]
11289
11364
+
Ala
CGC
[ENA]
¡û
>W1911580042
PEML01000273
Deinococcota
Thermus scotoductus 12_S12 [PEML]
25583
25658
+
Ala
CGC
[ENA]
¡û
>W1911580091
PEMM01000221
Deinococcota
Thermus scotoductus 11_S11 [PEMM]
26102
26177
+
Ala
CGC
[ENA]
¡û
>W1911580152
PEMN01000350
Deinococcota
Thermus scotoductus 10_S10 [PEMN]
7417
7342
-
Ala
CGC
[ENA]
¡û
>W1911580201
PEMO01000380
Deinococcota
Thermus scotoductus 9_S9 [PEMO]
6287
6212
-
Ala
CGC
[ENA]
¡û
>W1911580238
PEMP01000333
Deinococcota
Thermus scotoductus 8_S8 [PEMP]
27600
27675
+
Ala
CGC
[ENA]
¡û
>W1911580294
PEMQ01000281
Deinococcota
Thermus scotoductus 7_S7 [PEMQ]
25583
25658
+
Ala
CGC
[ENA]
¡û
>W1911580330
PEMR01000088
Deinococcota
Thermus scotoductus 6_S6 [PEMR]
7407
7332
-
Ala
CGC
[ENA]
¡û
>W1911580386
PEMS01000385
Deinococcota
Thermus scotoductus 5_S5 [PEMS]
6736
6811
+
Ala
CGC
[ENA]
¡û
>W1911580438
PEMT01000317
Deinococcota
Thermus scotoductus 4_S4 [PEMT]
6708
6783
+
Ala
CGC
[ENA]
¡û
>W1911580468
PEMU01000099
Deinococcota
Thermus scotoductus 3_S3 [PEMU]
7438
7363
-
Ala
CGC
[ENA]
¡û
>W1911580529
PEMV01000300
Deinococcota
Thermus scotoductus 2_S2 [PEMV]
5863
5788
-
Ala
CGC
[ENA]
¡û
>W1911580546
PEMW01000003
Deinococcota
Thermus scotoductus 1_S1 [PEMW]
1967
2042
+
Ala
CGC
[ENA]
¡û
>W1810268458
PRDA01000049
Deinococcota
Thermus tenuipuniceus YIM 76954 [PRDA]
20165
20090
-
Ala
CGC
[ENA]
¡û
>W1810605106
QGMX01000018
Deinococcota
Thermus caldifontis YIM 73026 [QGMX]
17345
17420
+
Ala
CGC
[ENA]
¡û
>W1810889178
QURO01000004
Deinococcota
Thermus sediminis L198 [QURO]
693136
693061
-
Ala
CGC
[ENA]
¡û
>ENV09004193
ADKJ01001509
Hot springs metagenome ctg_1106445192081
4964
4889
-
Ala
CGC
[ENA]
¡û
>W1511401683
JTJB01000003
Deinococcota
Thermus sp. 2.9 [JTJB]
40362
40437
+
Ala
CGC
[ENA]
¡û
>C11123043
CP001962
Deinococcota
Thermus scotoductus SA-01 [CP001962]
559755
559830
+
Ala
CGC
[Ensembl]
¡û
>C121006393
CP003126
Deinococcota
Thermus sp. CCB_US3_UF1 [CP003126]
743437
743512
+
Ala
CGC
[Ensembl]
¡û
>C161028698
CP010822
Deinococcota
Thermus aquaticus Y51MC23 [CP010822]
1421560
1421485
-
Ala
CGC
-
¡û
>W1610045306
BBBL01000031
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
8942
9017
+
Ala
CGC
[ENA]
¡û
>W1610045402
BBBN01000080
Deinococcota
Thermus sp. JCM 17653 [BBBN]
5295
5370
+
Ala
CGC
[ENA]
¡û
>C131002388
CP003249
Deinococcota
Thermus oshimai JL-2 [CP003249]
662298
662373
+
Ala
CGC
[Ensembl]
¡û
>W1610651406
LJJR01000051
Deinococcota
Thermus scotoductus [LJJR]
3938
4013
+
Ala
CGC
[ENA]
¡û
>W1710042147
BBBL01000031
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
8942
9017
+
Ala
CGC
[ENA]
¡û
>W1710042243
BBBN01000080
Deinococcota
Thermus sp. JCM 17653 [BBBN]
5295
5370
+
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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