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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hot springs metagenome ctg_1106445192081
Anticodon = GGC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.456534 (85 seq.)
>W1710787550
LJJR01000050
Deinococcota
Thermus scotoductus [LJJR]
25614
25689
+
Ala
GGC
[ENA]
¡û
>C171047200
CP016312
Deinococcota
Thermus brockianus GE-1 [CP016312]
1214073
1214148
+
Ala
GGC
-
¡û
>W131155607
AQOS01000014
Deinococcota
Thermus thermophilus ATCC 33923 [AQOS]
13578
13653
+
Ala
GGC
[ENA]
¡û
>W131160713
AQWU01000043
Deinococcota
Thermus igniterrae ATCC 700962 [AQWU]
17038
16963
-
Ala
GGC
[ENA]
¡û
>W131167528
ARDI01000015
Deinococcota
Thermus oshimai DSM 12092 [ARDI]
19748
19823
+
Ala
GGC
[ENA]
¡û
>W131177893
ARLD01000065
Deinococcota
Thermus scotoductus DSM 8553 [ARLD]
34025
33950
-
Ala
GGC
[ENA]
¡û
>W131218103
ATXJ01000008
Deinococcota
Thermus islandicus DSM 21543 [ATXJ]
59318
59393
+
Ala
GGC
[ENA]
¡û
>W131231960
AUIW01000008
Deinococcota
Thermus antranikianii DSM 12462 [AUIW]
13016
12941
-
Ala
GGC
[ENA]
¡û
>C025905
AE017221
Deinococcota
Thermus thermophilus HB27 [AE017221]
1347789
1347714
-
Ala
GGC
[Ensembl]
¡û
>C025943
AP008226
Deinococcota
Thermus thermophilus HB8 [AP008226]
1668773
1668698
-
Ala
GGC
[Ensembl]
¡û
>WENV180014864
FQKF010183515
[FQKF] soil metagenome; Soil
74
1
-
Ala
GGC
[ENA]
¢þ
>W141080516
ATNI01000063
Deinococcota
Thermus sp. NMX2.A1 [ATNI]
47913
47988
+
Ala
GGC
[ENA]
¡û
>W08011592
ABVK01000005
Deinococcota
Thermus aquaticus Y51MC23 [ABVK]
96345
96420
+
Ala
GGC
[ENA]
¡û
>WENV181227652
OFDN01025901
[OFDN] hot springs metagenome; Water
939
1014
+
Ala
GGC
[ENA]
¢þ
>WENV181285587
OFGS01003276
[OFGS] hot springs metagenome; Water and soil
82
157
+
Ala
GGC
[ENA]
¢þ
>WENV181404709
OGCB01000082
[OGCB] hot springs metagenome; Octopus Spring Streamers, Yellowstone National Park, Wyoming, USA
6098
6173
+
Ala
GGC
[ENA]
¢þ
>WENV181405350
OGCE01000010
[OGCE] hot springs metagenome; Octopus Spring, Yellowstone National Park, Wyoming, USA
38052
37977
-
Ala
GGC
[ENA]
¢þ
>WENV181408511
OGCH01004369
[OGCH] hot springs metagenome; hot springs
2925
3000
+
Ala
GGC
[ENA]
¢þ
>W141186990
AYLD01000292
Bacillota
Firmicutes bacterium JGI 0000112-M16 [AYLD]
861
936
+
Ala
GGC
[ENA]
¡û
>W141186993
AYLD01000508
Bacillota
Firmicutes bacterium JGI 0000112-M16 [AYLD]
362
437
+
Ala
GGC
[ENA]
¡û
>C181003586
AP017920
Deinococcota
Thermus thermophilus TMY [AP017920]
1159508
1159433
-
Ala
GGC
-
¡û
>C191159674
CP038452
Deinococcota
Thermus caldilimi YIM 78456 [CP038452]
2072542
2072617
+
Ala
GGC
-
¡û
>C191190012
LR027517
Deinococcota
Thermus thermophilus [LR027517]
1886655
1886730
+
Ala
GGC
-
¡û
>W141818255
JQLJ01000001
Deinococcota
Thermus scotoductus KI2 [JQLJ]
2004617
2004692
+
Ala
GGC
[ENA]
¡û
>W141818321
JQLK01000001
Deinococcota
Thermus tengchongensis YIM 77401 [JQLK]
250868
250793
-
Ala
GGC
[ENA]
¡û
>W141820343
JQMV01000003
Deinococcota
Thermus amyloliquefaciens YIM 77409 [JQMV]
242846
242921
+
Ala
GGC
[ENA]
¡û
>W141820755
JQNC01000003
Deinococcota
Thermus caliditerrae [JQNC]
1889854
1889929
+
Ala
GGC
[ENA]
¡û
>W1911578786
PELL01000054
Deinococcota
Thermus scotoductus 39_S39 [PELL]
1586
1661
+
Ala
GGC
[ENA]
¡û
>W1911578861
PELM01000470
Deinococcota
Thermus scotoductus 38_S38 [PELM]
6975
7050
+
Ala
GGC
[ENA]
¡û
>W1911578914
PELN01000372
Deinococcota
Thermus scotoductus 37_S37 [PELN]
2804
2729
-
Ala
GGC
[ENA]
¡û
>W1911578934
PELO01000061
Deinococcota
Thermus scotoductus 35_S35 [PELO]
3144
3069
-
Ala
GGC
[ENA]
¡û
>W1911578967
PELP01000013
Deinococcota
Thermus scotoductus 34_S34 [PELP]
4370
4445
+
Ala
GGC
[ENA]
¡û
>W1911579027
PELQ01000047
Deinococcota
Thermus scotoductus 33_S33 [PELQ]
3097
3022
-
Ala
GGC
[ENA]
¡û
>W1911579108
PELR01000378
Deinococcota
Thermus scotoductus 32_S32 [PELR]
8065
8140
+
Ala
GGC
[ENA]
¡û
>W1911579118
PELS01000051
Deinococcota
Thermus scotoductus 31_S31 [PELS]
1586
1661
+
Ala
GGC
[ENA]
¡û
>W1911579177
PELT01000052
Deinococcota
Thermus scotoductus 30_S30 [PELT]
1586
1661
+
Ala
GGC
[ENA]
¡û
>W1911579252
PELU01000453
Deinococcota
Thermus scotoductus 29_S29 [PELU]
8007
8082
+
Ala
GGC
[ENA]
¡û
>W1911579260
PELV01000011
Deinococcota
Thermus scotoductus 28_S28 [PELV]
6599
6524
-
Ala
GGC
[ENA]
¡û
>W1911579347
PELW01000399
Deinococcota
Thermus scotoductus 27_S27 [PELW]
2941
3016
+
Ala
GGC
[ENA]
¡û
>W1911579368
PELX01000065
Deinococcota
Thermus scotoductus 26_S26 [PELX]
1584
1659
+
Ala
GGC
[ENA]
¡û
>W1911579422
PELY01000072
Deinococcota
Thermus scotoductus 25_S25 [PELY]
1586
1661
+
Ala
GGC
[ENA]
¡û
>W1911579478
PELZ01000332
Deinococcota
Thermus scotoductus 24_S24 [PELZ]
9596
9671
+
Ala
GGC
[ENA]
¡û
>W1911579499
PEMA01000054
Deinococcota
Thermus scotoductus 23_S23 [PEMA]
1586
1661
+
Ala
GGC
[ENA]
¡û
>W1911579560
PEMB01000144
Deinococcota
Thermus scotoductus 22_S22 [PEMB]
1614
1689
+
Ala
GGC
[ENA]
¡û
>W1911579605
PEMC01000059
Deinococcota
Thermus scotoductus 21_S21 [PEMC]
1586
1661
+
Ala
GGC
[ENA]
¡û
>W1911579650
PEMD01000051
Deinococcota
Thermus scotoductus 20_S20 [PEMD]
3093
3018
-
Ala
GGC
[ENA]
¡û
>W1911579688
PEME01000040
Deinococcota
Thermus scotoductus 19_S19 [PEME]
3615
3540
-
Ala
GGC
[ENA]
¡û
>W1911579733
PEMF01000002
Deinococcota
Thermus scotoductus 18_S18 [PEMF]
5498
5573
+
Ala
GGC
[ENA]
¡û
>W1911579780
PEMG01000006
Deinococcota
Thermus scotoductus 17_S17 [PEMG]
1614
1689
+
Ala
GGC
[ENA]
¡û
>W1911579845
PEMH01000130
Deinococcota
Thermus scotoductus 16_S16 [PEMH]
1143
1068
-
Ala
GGC
[ENA]
¡û
>W1911579915
PEMI01000400
Deinococcota
Thermus scotoductus 15_S15 [PEMI]
3088
3013
-
Ala
GGC
[ENA]
¡û
>W1911579961
PEMJ01000331
Deinococcota
Thermus scotoductus 14_S14 [PEMJ]
10438
10513
+
Ala
GGC
[ENA]
¡û
>W1911579981
PEMK01000057
Deinococcota
Thermus scotoductus 13_S13 [PEMK]
3304
3229
-
Ala
GGC
[ENA]
¡û
>W1911580029
PEML01000070
Deinococcota
Thermus scotoductus 12_S12 [PEML]
1614
1689
+
Ala
GGC
[ENA]
¡û
>W1911580081
PEMM01000060
Deinococcota
Thermus scotoductus 11_S11 [PEMM]
1586
1661
+
Ala
GGC
[ENA]
¡û
>W1911580161
PEMN01000402
Deinococcota
Thermus scotoductus 10_S10 [PEMN]
5498
5573
+
Ala
GGC
[ENA]
¡û
>W1911580205
PEMO01000396
Deinococcota
Thermus scotoductus 9_S9 [PEMO]
2813
2738
-
Ala
GGC
[ENA]
¡û
>W1911580216
PEMP01000072
Deinococcota
Thermus scotoductus 8_S8 [PEMP]
2803
2728
-
Ala
GGC
[ENA]
¡û
>W1911580264
PEMQ01000042
Deinococcota
Thermus scotoductus 7_S7 [PEMQ]
3310
3235
-
Ala
GGC
[ENA]
¡û
>W1911580321
PEMR01000047
Deinococcota
Thermus scotoductus 6_S6 [PEMR]
3469
3394
-
Ala
GGC
[ENA]
¡û
>W1911580393
PEMS01000414
Deinococcota
Thermus scotoductus 5_S5 [PEMS]
6893
6818
-
Ala
GGC
[ENA]
¡û
>W1911580420
PEMT01000057
Deinococcota
Thermus scotoductus 4_S4 [PEMT]
1584
1659
+
Ala
GGC
[ENA]
¡û
>W1911580463
PEMU01000045
Deinococcota
Thermus scotoductus 3_S3 [PEMU]
3192
3117
-
Ala
GGC
[ENA]
¡û
>W1911580509
PEMV01000053
Deinococcota
Thermus scotoductus 2_S2 [PEMV]
3111
3036
-
Ala
GGC
[ENA]
¡û
>W1911580557
PEMW01000068
Deinococcota
Thermus scotoductus 1_S1 [PEMW]
2013
1938
-
Ala
GGC
[ENA]
¡û
>W1810268445
PRDA01000025
Deinococcota
Thermus tenuipuniceus YIM 76954 [PRDA]
7977
8052
+
Ala
GGC
[ENA]
¡û
>W1810605102
QGMX01000007
Deinococcota
Thermus caldifontis YIM 73026 [QGMX]
45956
45881
-
Ala
GGC
[ENA]
¡û
>ENV09004199
ADKJ01001552
Hot springs metagenome ctg_1106445192081
4347
4422
+
Ala
GGC
[ENA]
¡û
>C11114462
CP002630
Deinococcota
Marinithermus hydrothermalis DSM 14884 [CP002630]
249982
249907
-
Ala
GGC
[Ensembl]
¡û
>C11116304
CP002361
Deinococcota
Oceanithermus profundus DSM 14977 [CP002361]
544165
544240
+
Ala
GGC
[Ensembl]
¡û
>W1511401716
JTJB01000036
Deinococcota
Thermus sp. 2.9 [JTJB]
9038
8963
-
Ala
GGC
[ENA]
¡û
>C11123041
CP001962
Deinococcota
Thermus scotoductus SA-01 [CP001962]
244490
244565
+
Ala
GGC
[Ensembl]
¡û
>C11123196
CP002777
Deinococcota
Thermus thermophilus SG0.5JP17-16 [CP002777]
1702229
1702154
-
Ala
GGC
[Ensembl]
¡û
>C121006419
CP003126
Deinococcota
Thermus sp. CCB_US3_UF1 [CP003126]
2007832
2007757
-
Ala
GGC
[Ensembl]
¡û
>C121009723
CP003252
Deinococcota
Thermus thermophilus JL-18 [CP003252]
236055
236130
+
Ala
GGC
[Ensembl]
¡û
>C161028670
CP010822
Deinococcota
Thermus aquaticus Y51MC23 [CP010822]
141477
141552
+
Ala
GGC
-
¡û
>C161067085
CP014141
Deinococcota
Thermus parvatiensis RL [CP014141]
327034
327109
+
Ala
GGC
[Ensembl]
¡û
>W121056044
AIJQ01000016
Deinococcota
Thermus parvatiensis RL [AIJQ]
100516
100441
-
Ala
GGC
[ENA]
¡û
>W1610045341
BBBL01000424
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
831
906
+
Ala
GGC
[ENA]
¡û
>W1610045427
BBBN01000388
Deinococcota
Thermus sp. JCM 17653 [BBBN]
843
768
-
Ala
GGC
[ENA]
¡û
>C131002387
CP003249
Deinococcota
Thermus oshimai JL-2 [CP003249]
239320
239395
+
Ala
GGC
[Ensembl]
¡û
>W1610651405
LJJR01000050
Deinococcota
Thermus scotoductus [LJJR]
25614
25689
+
Ala
GGC
[ENA]
¡û
>W1710042182
BBBL01000424
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
831
906
+
Ala
GGC
[ENA]
¡û
>W1710042268
BBBN01000388
Deinococcota
Thermus sp. JCM 17653 [BBBN]
843
768
-
Ala
GGC
[ENA]
¡û
>W1710514664
FNBC01000039
Deinococcota
Thermus arciformis [FNBC]
14948
15023
+
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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