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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hot springs metagenome ctg_1106445192081
Anticodon = GTC
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.237155 (2 seq.)
>WENV181408304
OGCH01001617
[OGCH] hot springs metagenome; hot springs
5907
5830
-
Asp
GTC
[ENA]
¢þ
>ENV09004160
ADKJ01000380
Hot springs metagenome ctg_1106445192081
825
748
-
Asp
GTC
[ENA]
¡û
Identical group No.237156 (1 seq.)
>ENV09004177
ADKJ01000912
Hot springs metagenome ctg_1106445192081
5970
5894
-
Asp
GTC
[ENA]
¡û
Identical group No.275266 (84 seq.)
>W1710787541
LJJR01000033
Deinococcota
Thermus scotoductus [LJJR]
23780
23856
+
Asp
GTC
[ENA]
¡û
>C171047220
CP016312
Deinococcota
Thermus brockianus GE-1 [CP016312]
1157393
1157317
-
Asp
GTC
-
¡û
>W131155622
AQOS01000040
Deinococcota
Thermus thermophilus ATCC 33923 [AQOS]
6510
6434
-
Asp
GTC
[ENA]
¡û
>W131160709
AQWU01000037
Deinococcota
Thermus igniterrae ATCC 700962 [AQWU]
366
442
+
Asp
GTC
[ENA]
¡û
>W131167490
ARDI01000001
Deinococcota
Thermus oshimai DSM 12092 [ARDI]
159012
158936
-
Asp
GTC
[ENA]
¡û
>W131177896
ARLD01000074
Deinococcota
Thermus scotoductus DSM 8553 [ARLD]
1813
1889
+
Asp
GTC
[ENA]
¡û
>W131218115
ATXJ01000025
Deinococcota
Thermus islandicus DSM 21543 [ATXJ]
11370
11294
-
Asp
GTC
[ENA]
¡û
>W131231946
AUIW01000003
Deinococcota
Thermus antranikianii DSM 12462 [AUIW]
70578
70654
+
Asp
GTC
[ENA]
¡û
>C025878
AE017221
Deinococcota
Thermus thermophilus HB27 [AE017221]
987923
987999
+
Asp
GTC
[Ensembl]
¡û
>C025932
AP008226
Deinococcota
Thermus thermophilus HB8 [AP008226]
1311476
1311552
+
Asp
GTC
[Ensembl]
¡û
>WENV180014145
FPIC01067925
[FPIC] soil metagenome; Soil
6
82
+
Asp
GTC
[ENA]
¢þ
>W141080519
ATNI01000074
Deinococcota
Thermus sp. NMX2.A1 [ATNI]
44670
44746
+
Asp
GTC
[ENA]
¡û
>W08011582
ABVK01000003
Deinococcota
Thermus aquaticus Y51MC23 [ABVK]
184853
184780
-
Asp
GTC
[ENA]
¡û
>WENV181227812
OFDN01049251
[OFDN] hot springs metagenome; Water
137
61
-
Asp
GTC
[ENA]
¢þ
>WENV181285581
OFGS01003039
[OFGS] hot springs metagenome; Water and soil
840
764
-
Asp
GTC
[ENA]
¢þ
>WENV181404678
OGCB01000036
[OGCB] hot springs metagenome; Octopus Spring Streamers, Yellowstone National Park, Wyoming, USA
18546
18470
-
Asp
GTC
[ENA]
¢þ
>WENV181405436
OGCE01000101
[OGCE] hot springs metagenome; Octopus Spring, Yellowstone National Park, Wyoming, USA
15005
15081
+
Asp
GTC
[ENA]
¢þ
>WENV181408350
OGCH01001996
[OGCH] hot springs metagenome; hot springs
1633
1557
-
Asp
GTC
[ENA]
¢þ
>W141186988
AYLD01000221
Bacillota
Firmicutes bacterium JGI 0000112-M16 [AYLD]
1338
1262
-
Asp
GTC
[ENA]
¡û
>WENV170700821
LJSS01001949
[LJSS] hot springs metagenome; water from Lobios Hot Spring
156
232
+
Asp
GTC
[ENA]
¢þ
>C181003572
AP017920
Deinococcota
Thermus thermophilus TMY [AP017920]
1851208
1851132
-
Asp
GTC
-
¡û
>C191159660
CP038452
Deinococcota
Thermus caldilimi YIM 78456 [CP038452]
1406934
1407010
+
Asp
GTC
-
¡û
>C191190034
LR027517
Deinococcota
Thermus thermophilus [LR027517]
244279
244203
-
Asp
GTC
-
¡û
>W141818241
JQLJ01000001
Deinococcota
Thermus scotoductus KI2 [JQLJ]
1344792
1344868
+
Asp
GTC
[ENA]
¡û
>W141818305
JQLK01000001
Deinococcota
Thermus tengchongensis YIM 77401 [JQLK]
905683
905607
-
Asp
GTC
[ENA]
¡û
>W141820358
JQMV01000003
Deinococcota
Thermus amyloliquefaciens YIM 77409 [JQMV]
1660949
1661025
+
Asp
GTC
[ENA]
¡û
>W141820741
JQNC01000003
Deinococcota
Thermus caliditerrae [JQNC]
1245629
1245705
+
Asp
GTC
[ENA]
¡û
>W1911578781
PELL01000020
Deinococcota
Thermus scotoductus 39_S39 [PELL]
1747
1823
+
Asp
GTC
[ENA]
¡û
>W1911578855
PELM01000420
Deinococcota
Thermus scotoductus 38_S38 [PELM]
8095
8171
+
Asp
GTC
[ENA]
¡û
>W1911578890
PELN01000111
Deinococcota
Thermus scotoductus 37_S37 [PELN]
31887
31963
+
Asp
GTC
[ENA]
¡û
>W1911578959
PELO01000305
Deinococcota
Thermus scotoductus 35_S35 [PELO]
946
870
-
Asp
GTC
[ENA]
¡û
>W1911579012
PELP01000580
Deinococcota
Thermus scotoductus 34_S34 [PELP]
3034
3110
+
Asp
GTC
[ENA]
¡û
>W1911579060
PELQ01000346
Deinococcota
Thermus scotoductus 33_S33 [PELQ]
1488
1412
-
Asp
GTC
[ENA]
¡û
>W1911579094
PELR01000324
Deinococcota
Thermus scotoductus 32_S32 [PELR]
31926
32002
+
Asp
GTC
[ENA]
¡û
>W1911579123
PELS01000110
Deinococcota
Thermus scotoductus 31_S31 [PELS]
1533
1457
-
Asp
GTC
[ENA]
¡û
>W1911579200
PELT01000286
Deinococcota
Thermus scotoductus 30_S30 [PELT]
1478
1402
-
Asp
GTC
[ENA]
¡û
>W1911579211
PELU01000011
Deinococcota
Thermus scotoductus 29_S29 [PELU]
18769
18693
-
Asp
GTC
[ENA]
¡û
>W1911579301
PELV01000407
Deinococcota
Thermus scotoductus 28_S28 [PELV]
6821
6745
-
Asp
GTC
[ENA]
¡û
>W1911579305
PELW01000009
Deinococcota
Thermus scotoductus 27_S27 [PELW]
4798
4722
-
Asp
GTC
[ENA]
¡û
>W1911579391
PELX01000315
Deinococcota
Thermus scotoductus 26_S26 [PELX]
948
872
-
Asp
GTC
[ENA]
¡û
>W1911579401
PELY01000016
Deinococcota
Thermus scotoductus 25_S25 [PELY]
1747
1823
+
Asp
GTC
[ENA]
¡û
>W1911579485
PELZ01000449
Deinococcota
Thermus scotoductus 24_S24 [PELZ]
1444
1368
-
Asp
GTC
[ENA]
¡û
>W1911579522
PEMA01000298
Deinococcota
Thermus scotoductus 23_S23 [PEMA]
1362
1286
-
Asp
GTC
[ENA]
¡û
>W1911579576
PEMB01000338
Deinococcota
Thermus scotoductus 22_S22 [PEMB]
9699
9775
+
Asp
GTC
[ENA]
¡û
>W1911579609
PEMC01000099
Deinococcota
Thermus scotoductus 21_S21 [PEMC]
1362
1286
-
Asp
GTC
[ENA]
¡û
>W1911579677
PEMD01000300
Deinococcota
Thermus scotoductus 20_S20 [PEMD]
946
870
-
Asp
GTC
[ENA]
¡û
>W1911579718
PEME01000320
Deinococcota
Thermus scotoductus 19_S19 [PEME]
3703
3627
-
Asp
GTC
[ENA]
¡û
>W1911579746
PEMF01000027
Deinococcota
Thermus scotoductus 18_S18 [PEMF]
4339
4263
-
Asp
GTC
[ENA]
¡û
>W1911579785
PEMG01000019
Deinococcota
Thermus scotoductus 17_S17 [PEMG]
4066
3990
-
Asp
GTC
[ENA]
¡û
>W1911579833
PEMH01000042
Deinococcota
Thermus scotoductus 16_S16 [PEMH]
3480
3556
+
Asp
GTC
[ENA]
¡û
>W1911579896
PEMI01000222
Deinococcota
Thermus scotoductus 15_S15 [PEMI]
31926
32002
+
Asp
GTC
[ENA]
¡û
>W1911579941
PEMJ01000111
Deinococcota
Thermus scotoductus 14_S14 [PEMJ]
4051
3975
-
Asp
GTC
[ENA]
¡û
>W1911580001
PEMK01000286
Deinococcota
Thermus scotoductus 13_S13 [PEMK]
1403
1327
-
Asp
GTC
[ENA]
¡û
>W1911580049
PEML01000294
Deinococcota
Thermus scotoductus 12_S12 [PEML]
946
870
-
Asp
GTC
[ENA]
¡û
>W1911580101
PEMM01000267
Deinococcota
Thermus scotoductus 11_S11 [PEMM]
1559
1483
-
Asp
GTC
[ENA]
¡û
>W1911580123
PEMN01000014
Deinococcota
Thermus scotoductus 10_S10 [PEMN]
4641
4565
-
Asp
GTC
[ENA]
¡û
>W1911580175
PEMO01000111
Deinococcota
Thermus scotoductus 9_S9 [PEMO]
29431
29355
-
Asp
GTC
[ENA]
¡û
>W1911580221
PEMP01000111
Deinococcota
Thermus scotoductus 8_S8 [PEMP]
31926
32002
+
Asp
GTC
[ENA]
¡û
>W1911580298
PEMQ01000292
Deinococcota
Thermus scotoductus 7_S7 [PEMQ]
948
872
-
Asp
GTC
[ENA]
¡û
>W1911580340
PEMR01000252
Deinococcota
Thermus scotoductus 6_S6 [PEMR]
3698
3622
-
Asp
GTC
[ENA]
¡û
>W1911580394
PEMS01000416
Deinococcota
Thermus scotoductus 5_S5 [PEMS]
3033
3109
+
Asp
GTC
[ENA]
¡û
>W1911580435
PEMT01000298
Deinococcota
Thermus scotoductus 4_S4 [PEMT]
1494
1418
-
Asp
GTC
[ENA]
¡û
>W1911580492
PEMU01000326
Deinococcota
Thermus scotoductus 3_S3 [PEMU]
3111
3035
-
Asp
GTC
[ENA]
¡û
>W1911580530
PEMV01000305
Deinococcota
Thermus scotoductus 2_S2 [PEMV]
1467
1391
-
Asp
GTC
[ENA]
¡û
>W1911580569
PEMW01000260
Deinococcota
Thermus scotoductus 1_S1 [PEMW]
960
884
-
Asp
GTC
[ENA]
¡û
>W1810605081
QGMX01000002
Deinococcota
Thermus caldifontis YIM 73026 [QGMX]
153308
153384
+
Asp
GTC
[ENA]
¡û
>W1810889143
QURO01000004
Deinococcota
Thermus sediminis L198 [QURO]
828381
828457
+
Asp
GTC
[ENA]
¡û
>ENV09004197
ADKJ01001549
Hot springs metagenome ctg_1106445192081
2222
2298
+
Asp
GTC
[ENA]
¡û
>W1511312773
JPSL02000037
Deinococcota
Thermus filiformis ATCC 43280 [JPSL]
134703
134627
-
Asp
GTC
[ENA]
¡û
>W1511401680
JTJB01000001
Deinococcota
Thermus sp. 2.9 [JTJB]
77000
76924
-
Asp
GTC
[ENA]
¡û
>C11123056
CP001962
Deinococcota
Thermus scotoductus SA-01 [CP001962]
1954964
1955040
+
Asp
GTC
[Ensembl]
¡û
>C11123185
CP002777
Deinococcota
Thermus thermophilus SG0.5JP17-16 [CP002777]
1337175
1337251
+
Asp
GTC
[Ensembl]
¡û
>C121006430
CP003126
Deinococcota
Thermus sp. CCB_US3_UF1 [CP003126]
626364
626288
-
Asp
GTC
[Ensembl]
¡û
>C121009754
CP003252
Deinococcota
Thermus thermophilus JL-18 [CP003252]
594830
594754
-
Asp
GTC
[Ensembl]
¡û
>C161028706
CP010822
Deinococcota
Thermus aquaticus Y51MC23 [CP010822]
470865
470789
-
Asp
GTC
-
¡û
>C161067111
CP014141
Deinococcota
Thermus parvatiensis RL [CP014141]
675489
675413
-
Asp
GTC
[Ensembl]
¡û
>W121056038
AIJQ01000012
Deinococcota
Thermus parvatiensis RL [AIJQ]
26409
26485
+
Asp
GTC
[ENA]
¡û
>W1610045324
BBBL01000156
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
1972
2048
+
Asp
GTC
[ENA]
¡û
>W1610045430
BBBN01000595
Deinococcota
Thermus sp. JCM 17653 [BBBN]
267
343
+
Asp
GTC
[ENA]
¡û
>C131002427
CP003249
Deinococcota
Thermus oshimai JL-2 [CP003249]
402342
402266
-
Asp
GTC
[Ensembl]
¡û
>W1610651396
LJJR01000033
Deinococcota
Thermus scotoductus [LJJR]
23780
23856
+
Asp
GTC
[ENA]
¡û
>W1710042165
BBBL01000156
Deinococcota
Thermus kawarayensis JCM 12314 [BBBL]
1972
2048
+
Asp
GTC
[ENA]
¡û
>W1710042271
BBBN01000595
Deinococcota
Thermus sp. JCM 17653 [BBBN]
267
343
+
Asp
GTC
[ENA]
¡û
>W1710514645
FNBC01000009
Deinococcota
Thermus arciformis [FNBC]
25619
25543
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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