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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hydrothermal vent metagenome LCHCB.C1
Anticodon = CAC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.660083 (16 seq.)
>W131183010
ARRM01000003
Alphaproteobacteria
Salipiger mucosus DSM 16094 [ARRM]
51949
51875
-
Val
CAC
[ENA]
¡û
>W131231311
AUIJ01000008
Alphaproteobacteria
Sediminimonas qiaohouensis DSM 21189 [AUIJ]
2241
2167
-
Val
CAC
[ENA]
¡û
>W1711695322
MSIT01000008
Alphaproteobacteria
Salibaculum halophilum WDS1C4 [MSIT]
170473
170399
-
Val
CAC
[ENA]
¡û
>W1712085126
NHTQ01000001
Alphaproteobacteria
Rhodobacteraceae bacterium WFHF2C18 [NHTQ]
289076
289150
+
Val
CAC
[ENA]
¡û
>W141064400
APVH01000032
Alphaproteobacteria
Salipiger mucosus DSM 16094 [APVH]
144614
144688
+
Val
CAC
[ENA]
¡û
>WENV170016021
AZIJ01008310
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
160
86
-
Val
CAC
[ENA]
¢þ
>WENV170655038
JTFN01002430
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
182
108
-
Val
CAC
[ENA]
¢þ
>WENV170655039
JTFN01002431
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
281
355
+
Val
CAC
[ENA]
¢þ
>WENV170656070
JTFN01125582
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
76
2
-
Val
CAC
[ENA]
¢þ
>W1910442670
FWFK01000003
Alphaproteobacteria
Roseivivax jejudonensis CECT 8625 [FWFK]
592172
592098
-
Val
CAC
[ENA]
¡û
>W1911582624
PHNT01000008
Alphaproteobacteria
Roseovarius salinarum N53 [PHNT]
14229
14155
-
Val
CAC
[ENA]
¡û
>W1810633783
QITQ01000009
Alphaproteobacteria
Roseovarius amoyensis GCL-8 [QITQ]
7645
7571
-
Val
CAC
[ENA]
¡û
>W1810707333
QNGB01000023
Alphaproteobacteria
Roseovarius sp. TE539 [QNGB]
1515
1441
-
Val
CAC
[ENA]
¡û
>W1810914912
QVQC01000073
Alphaproteobacteria
Rhodobacteraceae bacterium W635 [QVQC]
30124
30198
+
Val
CAC
[ENA]
¡û
>ENV09001744
ACQI01004650
Hydrothermal vent metagenome LCHCB.C1
1101
1027
-
Val
CAC
[ENA]
¡û
>W1710573885
FOXV01000010
Alphaproteobacteria
Roseivivax halotolerans [FOXV]
93989
93915
-
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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