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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hydrothermal vent metagenome LCHCB.C1
Anticodon = CCA
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.490062 (1 seq.)
>ENV09001713
ACQI01003428
Hydrothermal vent metagenome LCHCB.C1
980
1055
+
Trp
CCA
[ENA]
¡û
Identical group No.490067 (2 seq.)
>WENV170690368
LFRM01337701
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
952
1027
+
Trp
CCA
[ENA]
¢þ
>ENV09001730
ACQI01003909
Hydrothermal vent metagenome LCHCB.C1
680
605
-
Trp
CCA
[ENA]
¡û
Identical group No.490093 (1 seq.)
>ENV09001848
ACQI01016120
Hydrothermal vent metagenome LCHCB.C1
339
267
-
Trp
CCA
[ENA]
¡û
Identical group No.490099 (1 seq.)
>ENV09001885
ACQI01021837
Hydrothermal vent metagenome LCHCB.C1
531
456
-
Trp
CCA
[ENA]
¡û
Identical group No.789630 (1 seq.)
>ENV09001754
ACQI01005061
Hydrothermal vent metagenome LCHCB.C1
419
348
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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