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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hydrothermal vent metagenome LCHCB.C1
Anticodon = CCT
HIT:
9 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.306427 (1 seq.)
>ENV09001771
ACQI01005320
Hydrothermal vent metagenome LCHCB.C1
619
695
+
Arg
CCT
[ENA]
¡û
Identical group No.490059 (1 seq.)
>ENV09001685
ACQI01002290
Hydrothermal vent metagenome LCHCB.C1
1153
1078
-
Arg
CCT
[ENA]
¡û
Identical group No.490089 (1 seq.)
>ENV09001822
ACQI01011302
Hydrothermal vent metagenome LCHCB.C1
136
62
-
Arg
CCT
[ENA]
¡û
Identical group No.490095 (1 seq.)
>ENV09001855
ACQI01016958
Hydrothermal vent metagenome LCHCB.C1
221
296
+
Arg
CCT
[ENA]
¡û
Identical group No.675850 (2 seq.)
>ENV09001741
ACQI01004400
Hydrothermal vent metagenome LCHCB.C1
16290
16364
+
Arg
CCT
[ENA]
¡û
>ENV09001823
ACQI01011314
Hydrothermal vent metagenome LCHCB.C1
201
127
-
Arg
CCT
[ENA]
¡û
Identical group No.675856 (1 seq.)
>ENV09001761
ACQI01005268
Hydrothermal vent metagenome LCHCB.C1
1258
1332
+
Arg
CCT
[ENA]
¡û
Identical group No.675862 (1 seq.)
>ENV09001814
ACQI01011033
Hydrothermal vent metagenome LCHCB.C1
662
588
-
Arg
CCT
[ENA]
¡û
Identical group No.675868 (1 seq.)
>ENV09001876
ACQI01019717
Hydrothermal vent metagenome LCHCB.C1
194
268
+
Arg
CCT
[ENA]
¡û
Identical group No.789632 (1 seq.)
>ENV09001887
ACQI01022004
Hydrothermal vent metagenome LCHCB.C1
191
118
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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