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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hydrothermal vent metagenome LCHCB.C1
Anticodon = GCT
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.13685 (3 seq.)
>ENV09001775
ACQI01005489
Hydrothermal vent metagenome LCHCB.C1
399
491
+
Ser
GCT
[ENA]
¡û
>ENV09001804
ACQI01008849
Hydrothermal vent metagenome LCHCB.C1
267
175
-
Ser
GCT
[ENA]
¡û
>ENV09001900
ACQI01023646
Hydrothermal vent metagenome LCHCB.C1
568
476
-
Ser
GCT
[ENA]
¡û
Identical group No.33313 (1 seq.)
>ENV09001786
ACQI01006024
Hydrothermal vent metagenome LCHCB.C1
2304
2214
-
Ser
GCT
[ENA]
¡û
Identical group No.91315 (1 seq.)
>ENV09001742
ACQI01004504
Hydrothermal vent metagenome LCHCB.C1
536
450
-
Ser
GCT
[ENA]
¡û
Identical group No.91320 (1 seq.)
>ENV09001897
ACQI01023147
Hydrothermal vent metagenome LCHCB.C1
263
176
-
Ser
GCT
[ENA]
¡û
Identical group No.119715 (1 seq.)
>ENV09001838
ACQI01014118
Hydrothermal vent metagenome LCHCB.C1
287
201
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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