This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hydrothermal vent metagenome LCHCB.C1
Anticodon = GTA
HIT:
10 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.158332 (1 seq.)
>ENV09001690
ACQI01002691
Hydrothermal vent metagenome LCHCB.C1
140
223
+
Tyr
GTA
[ENA]
¡û
Identical group No.158333 (1 seq.)
>ENV09001707
ACQI01003258
Hydrothermal vent metagenome LCHCB.C1
964
1049
+
Tyr
GTA
[ENA]
¡û
Identical group No.158334 (1 seq.)
>ENV09001734
ACQI01003985
Hydrothermal vent metagenome LCHCB.C1
576
661
+
Tyr
GTA
[ENA]
¡û
Identical group No.158337 (1 seq.)
>ENV09001896
ACQI01022674
Hydrothermal vent metagenome LCHCB.C1
287
372
+
Tyr
GTA
[ENA]
¡û
Identical group No.187344 (1 seq.)
>ENV09001805
ACQI01008886
Hydrothermal vent metagenome LCHCB.C1
303
219
-
Tyr
GTA
[ENA]
¡û
Identical group No.187347 (2 seq.)
>ENV09001852
ACQI01016698
Hydrothermal vent metagenome LCHCB.C1
106
190
+
Tyr
GTA
[ENA]
¡û
>W1710601610
FUXL01000006
Alphaproteobacteria
Consotaella salsifontis USBA 369 [FUXL]
80821
80737
-
Tyr
GTA
[ENA]
¡û
Identical group No.187350 (5 seq.)
>WENV183516031
OMKS01121752
[OMKS] sediment metagenome; hot spring sediment
349
433
+
Tyr
GTA
[ENA]
¢þ
>WENV170698569
LGVF01363549
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
20858
20774
-
Tyr
GTA
[ENA]
¢þ
>WENV170704265
LLEJ01000917
[LLEJ] bioreactor metagenome; day101 10degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
3337
3253
-
Tyr
GTA
[ENA]
¢þ
>WENV170704584
LLEL01002282
[LLEL] bioreactor metagenome; day35 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
232
316
+
Tyr
GTA
[ENA]
¢þ
>ENV09001893
ACQI01022491
Hydrothermal vent metagenome LCHCB.C1
579
663
+
Tyr
GTA
[ENA]
¡û
Identical group No.187352 (1 seq.)
>ENV09001901
ACQI01023694
Hydrothermal vent metagenome LCHCB.C1
460
378
-
Tyr
GTA
[ENA]
¡û
Identical group No.187354 (1 seq.)
>ENV09001913
ACQI01025638
Hydrothermal vent metagenome LCHCB.C1
411
327
-
Tyr
GTA
[ENA]
¡û
Identical group No.219607 (47 seq.)
>W1711229359
LXYJ01000017
Alphaproteobacteria
Jannaschia sp. EhC01 [LXYJ]
48
131
+
Pseudo
GTA
[ENA]
¡û
>C011072
CP000264
Alphaproteobacteria
Jannaschia sp. CCS1 [CP000264]
2814922
2815005
+
Tyr
GTA
[Ensembl]
¡û
>w023673
AAYB01000002
Alphaproteobacteria
Roseobacter sp. CCS2 [AAYB]
802247
802162
-
Tyr
GTA
[ENA]
¡û
>WENV180114063
OAPR01134005
[OAPR] marine metagenome; seawater
181
98
-
Tyr
GTA
[ENA]
¢þ
>W141142894
AWRV01000108
Alphaproteobacteria
Rhodobacteraceae bacterium PD-2 [AWRV]
1901
1984
+
Pseudo
GTA
[ENA]
¡û
>WENV183712594
PDWI01106336
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
2042
1959
-
Tyr
GTA
[ENA]
¢þ
>WENV183718494
PDWJ01004378
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
10086
10169
+
Tyr
GTA
[ENA]
¢þ
>WENV170022725
BCQK01040412
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
705
788
+
Tyr
GTA
[ENA]
¢þ
>WENV170023935
BCQL01010428
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
1324
1407
+
Tyr
GTA
[ENA]
¢þ
>WENV170647174
JQIA01014736
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
1760
1843
+
Tyr
GTA
[ENA]
¢þ
>W141464084
JFKE01000005
Alphaproteobacteria
Actibacterium mucosum KCTC 23349 [JFKE]
169051
168968
-
Pseudo
GTA
[ENA]
¡û
>W09102752
AAIG01000007
Alphaproteobacteria
Jannaschia sp. CCS1 [AAIG]
132030
132113
+
Tyr
GTA
[ENA]
¡û
>C181068115
CP022540
Alphaproteobacteria
Antarctobacter heliothermus SMS3 [CP022540]
4523768
4523851
+
Tyr
GTA
-
¡û
>C191084713
CP032125
Alphaproteobacteria
Profundibacter amoris BAR1 [CP032125]
2101883
2101966
+
Tyr
GTA
-
¡û
>W1910285106
FREV01000003
Alphaproteobacteria
Loktanella sp. Alg231-35 [FREV]
103851
103768
-
Tyr
GTA
[ENA]
¡û
>W1910499007
FXXP01000001
Alphaproteobacteria
Pelagimonas phthalicica CECT 8649 [FXXP]
1795394
1795311
-
Tyr
GTA
[ENA]
¡û
>W1910499775
FXYF01000006
Alphaproteobacteria
Maliponia aquimaris CECT 8898 [FXYF]
236484
236567
+
Tyr
GTA
[ENA]
¡û
>W1910499880
FXYH01000014
Alphaproteobacteria
Pelagimonas varians CECT 8663 [FXYH]
116847
116930
+
Tyr
GTA
[ENA]
¡û
>W1910548447
FZON01000007
Alphaproteobacteria
Antarctobacter heliothermus DSM 11445 [FZON]
38330
38247
-
Tyr
GTA
[ENA]
¡û
>W1911747142
QWDA01000002
Alphaproteobacteria
Paracoccaceae bacterium IMCC 34051 [QWDA]
287581
287498
-
Tyr
GTA
[ENA]
¡û
>W1810102048
PGTY01000001
Alphaproteobacteria
Yoonia maricola DSM 29128 [PGTY]
97766
97683
-
Tyr
GTA
[ENA]
¡û
>W1810185215
PKFN01000008
Alphaproteobacteria
Yoonia maritima YPC211 [PKFN]
162643
162726
+
Tyr
GTA
[ENA]
¡û
>W1810368922
PWAA01000042
Alphaproteobacteria
Thalassobius sp. I31.1 [PWAA]
198243
198160
-
Tyr
GTA
[ENA]
¡û
>W1810594721
QGDJ01000014
Alphaproteobacteria
Jannaschia seohaensis DSM 25227 [QGDJ]
21897
21814
-
Tyr
GTA
[ENA]
¡û
>W1810658649
QJJL01000004
Alphaproteobacteria
Loktanella sp. PT4BL [QJJL]
47846
47929
+
Tyr
GTA
[ENA]
¡û
>W1810676767
QKMF01000013
Alphaproteobacteria
Pelagimonas varians DSM 23678 [QKMF]
22793
22710
-
Tyr
GTA
[ENA]
¡û
>W1810725076
QOCG01000022
Alphaproteobacteria
Loktanella sp. D2R18 [QOCG]
129935
130018
+
Tyr
GTA
[ENA]
¡û
>W1810761091
QPLJ01000001
Alphaproteobacteria
Jannaschia formosa 12N15 [QPLJ]
151182
151265
+
Tyr
GTA
[ENA]
¡û
>ENV09001873
ACQI01019484
Hydrothermal vent metagenome LCHCB.C1
387
304
-
Pseudo
GTA
[ENA]
¡û
>W1511518669
JXYE01000002
Alphaproteobacteria
Loktanella sp. S4079 [JXYE]
302258
302175
-
Tyr
GTA
[ENA]
¡û
>W1610092028
CXSU01000005
Alphaproteobacteria
Jannaschia donghaensis [CXSU]
686045
685962
-
Pseudo
GTA
[ENA]
¡û
>W1610092901
CYSE01000001
Alphaproteobacteria
Tropicibacter naphthalenivorans [CYSE]
649361
649278
-
Pseudo
GTA
[ENA]
¡û
>W1610094194
CYTO01000009
Alphaproteobacteria
Cognatishimia activa CECT 5113 [CYTO]
243291
243208
-
Pseudo
GTA
[ENA]
¡û
>W1610095019
CYUE01000020
Alphaproteobacteria
Cognatishimia activa CECT 5114 [CYUE]
522958
522875
-
Pseudo
GTA
[ENA]
¡û
>W1610628544
LIGP01000007
Alphaproteobacteria
Loktanella sp. 1ANDIMAR09 [LIGP]
155951
155868
-
Pseudo
GTA
[ENA]
¡û
>W1610641296
LJAL01000008
Alphaproteobacteria
Loktanella sp. 5RATIMAR09 [LJAL]
53413
53496
+
Pseudo
GTA
[ENA]
¡û
>W1611013229
LXYJ01000017
Alphaproteobacteria
Jannaschia sp. EhC01 [LXYJ]
48
131
+
Pseudo
GTA
[ENA]
¡û
>W1710095385
CXSU01000005
Alphaproteobacteria
Jannaschia donghaensis [CXSU]
686045
685962
-
Pseudo
GTA
[ENA]
¡û
>W1710096156
CYSE01000001
Alphaproteobacteria
Tropicibacter naphthalenivorans [CYSE]
649361
649278
-
Pseudo
GTA
[ENA]
¡û
>W1710531928
FNPX01000018
Alphaproteobacteria
Jannaschia faecimaris [FNPX]
35409
35326
-
Pseudo
GTA
[ENA]
¡û
>W1710543099
FNZQ01000005
Alphaproteobacteria
Jannaschia helgolandensis [FNZQ]
92352
92435
+
Pseudo
GTA
[ENA]
¡û
>W1710565137
FORA01000001
Alphaproteobacteria
Jannaschia pohangensis [FORA]
1071150
1071233
+
Pseudo
GTA
[ENA]
¡û
>W1710574893
FOYP01000001
Alphaproteobacteria
Yoonia tamlensis [FOYP]
799900
799817
-
Pseudo
GTA
[ENA]
¡û
>W1710575789
FOZM01000001
Alphaproteobacteria
Yoonia litorea [FOZM]
1667070
1667153
+
Pseudo
GTA
[ENA]
¡û
>W1710585609
FQWM01000001
Alphaproteobacteria
Cognatishimia maritima maritimus [FQWM]
788103
788186
+
Pseudo
GTA
[ENA]
¡û
>W1710600096
FTPR01000001
Alphaproteobacteria
Yoonia rosea [FTPR]
1315825
1315908
+
Pseudo
GTA
[ENA]
¡û
>W1710606548
FWXX01000001
Alphaproteobacteria
Tropicibacter naphthalenivorans [FWXX]
249581
249664
+
Pseudo
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK