tRNA genes clustered and arranged according to each identical group

Hydrothermal vent metagenome LCHCB.C1

Anticodon = GTA

HIT: 10 Group(s).
Download Sequence Representative sequence of each cluster
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Sort by Identical group No. Sort by the number of tRNAs in the Identical group
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Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.158332 (1 seq.)
>ENV09001690 ACQI01002691 Hydrothermal vent metagenome LCHCB.C1 140 223 + Tyr GTA [ENA] ¡û
Identical group No.158333 (1 seq.)
>ENV09001707 ACQI01003258 Hydrothermal vent metagenome LCHCB.C1 964 1049 + Tyr GTA [ENA] ¡û
Identical group No.158334 (1 seq.)
>ENV09001734 ACQI01003985 Hydrothermal vent metagenome LCHCB.C1 576 661 + Tyr GTA [ENA] ¡û
Identical group No.158337 (1 seq.)
>ENV09001896 ACQI01022674 Hydrothermal vent metagenome LCHCB.C1 287 372 + Tyr GTA [ENA] ¡û
Identical group No.187344 (1 seq.)
>ENV09001805 ACQI01008886 Hydrothermal vent metagenome LCHCB.C1 303 219 - Tyr GTA [ENA] ¡û
Identical group No.187347 (2 seq.)
>ENV09001852 ACQI01016698 Hydrothermal vent metagenome LCHCB.C1 106 190 + Tyr GTA [ENA] ¡û
>W1710601610 FUXL01000006 Alphaproteobacteria Consotaella salsifontis USBA 369 [FUXL] 80821 80737 - Tyr GTA [ENA] ¡û
Identical group No.187350 (5 seq.)
>WENV183516031 OMKS01121752 [OMKS] sediment metagenome; hot spring sediment 349 433 + Tyr GTA [ENA] ¢þ
>WENV170698569 LGVF01363549 [LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge 20858 20774 - Tyr GTA [ENA] ¢þ
>WENV170704265 LLEJ01000917 [LLEJ] bioreactor metagenome; day101 10degC chemostat 2011 inoculated with Wadden Sea sediment taken from the upper 2 cm of the 3337 3253 - Tyr GTA [ENA] ¢þ
>WENV170704584 LLEL01002282 [LLEL] bioreactor metagenome; day35 10degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the 232 316 + Tyr GTA [ENA] ¢þ
>ENV09001893 ACQI01022491 Hydrothermal vent metagenome LCHCB.C1 579 663 + Tyr GTA [ENA] ¡û
Identical group No.187352 (1 seq.)
>ENV09001901 ACQI01023694 Hydrothermal vent metagenome LCHCB.C1 460 378 - Tyr GTA [ENA] ¡û
Identical group No.187354 (1 seq.)
>ENV09001913 ACQI01025638 Hydrothermal vent metagenome LCHCB.C1 411 327 - Tyr GTA [ENA] ¡û
Identical group No.219607 (47 seq.)
>W1711229359 LXYJ01000017 Alphaproteobacteria Jannaschia sp. EhC01 [LXYJ] 48 131 + Pseudo GTA [ENA] ¡û
>C011072 CP000264 Alphaproteobacteria Jannaschia sp. CCS1 [CP000264] 2814922 2815005 + Tyr GTA [Ensembl] ¡û
>w023673 AAYB01000002 Alphaproteobacteria Roseobacter sp. CCS2 [AAYB] 802247 802162 - Tyr GTA [ENA] ¡û
>WENV180114063 OAPR01134005 [OAPR] marine metagenome; seawater 181 98 - Tyr GTA [ENA] ¢þ
>W141142894 AWRV01000108 Alphaproteobacteria Rhodobacteraceae bacterium PD-2 [AWRV] 1901 1984 + Pseudo GTA [ENA] ¡û
>WENV183712594 PDWI01106336 [PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z 2042 1959 - Tyr GTA [ENA] ¢þ
>WENV183718494 PDWJ01004378 [PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J 10086 10169 + Tyr GTA [ENA] ¢þ
>WENV170022725 BCQK01040412 [BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama 705 788 + Tyr GTA [ENA] ¢þ
>WENV170023935 BCQL01010428 [BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa 1324 1407 + Tyr GTA [ENA] ¢þ
>WENV170647174 JQIA01014736 [JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead 1760 1843 + Tyr GTA [ENA] ¢þ
>W141464084 JFKE01000005 Alphaproteobacteria Actibacterium mucosum KCTC 23349 [JFKE] 169051 168968 - Pseudo GTA [ENA] ¡û
>W09102752 AAIG01000007 Alphaproteobacteria Jannaschia sp. CCS1 [AAIG] 132030 132113 + Tyr GTA [ENA] ¡û
>C181068115 CP022540 Alphaproteobacteria Antarctobacter heliothermus SMS3 [CP022540] 4523768 4523851 + Tyr GTA - ¡û
>C191084713 CP032125 Alphaproteobacteria Profundibacter amoris BAR1 [CP032125] 2101883 2101966 + Tyr GTA - ¡û
>W1910285106 FREV01000003 Alphaproteobacteria Loktanella sp. Alg231-35 [FREV] 103851 103768 - Tyr GTA [ENA] ¡û
>W1910499007 FXXP01000001 Alphaproteobacteria Pelagimonas phthalicica CECT 8649 [FXXP] 1795394 1795311 - Tyr GTA [ENA] ¡û
>W1910499775 FXYF01000006 Alphaproteobacteria Maliponia aquimaris CECT 8898 [FXYF] 236484 236567 + Tyr GTA [ENA] ¡û
>W1910499880 FXYH01000014 Alphaproteobacteria Pelagimonas varians CECT 8663 [FXYH] 116847 116930 + Tyr GTA [ENA] ¡û
>W1910548447 FZON01000007 Alphaproteobacteria Antarctobacter heliothermus DSM 11445 [FZON] 38330 38247 - Tyr GTA [ENA] ¡û
>W1911747142 QWDA01000002 Alphaproteobacteria Paracoccaceae bacterium IMCC 34051 [QWDA] 287581 287498 - Tyr GTA [ENA] ¡û
>W1810102048 PGTY01000001 Alphaproteobacteria Yoonia maricola DSM 29128 [PGTY] 97766 97683 - Tyr GTA [ENA] ¡û
>W1810185215 PKFN01000008 Alphaproteobacteria Yoonia maritima YPC211 [PKFN] 162643 162726 + Tyr GTA [ENA] ¡û
>W1810368922 PWAA01000042 Alphaproteobacteria Thalassobius sp. I31.1 [PWAA] 198243 198160 - Tyr GTA [ENA] ¡û
>W1810594721 QGDJ01000014 Alphaproteobacteria Jannaschia seohaensis DSM 25227 [QGDJ] 21897 21814 - Tyr GTA [ENA] ¡û
>W1810658649 QJJL01000004 Alphaproteobacteria Loktanella sp. PT4BL [QJJL] 47846 47929 + Tyr GTA [ENA] ¡û
>W1810676767 QKMF01000013 Alphaproteobacteria Pelagimonas varians DSM 23678 [QKMF] 22793 22710 - Tyr GTA [ENA] ¡û
>W1810725076 QOCG01000022 Alphaproteobacteria Loktanella sp. D2R18 [QOCG] 129935 130018 + Tyr GTA [ENA] ¡û
>W1810761091 QPLJ01000001 Alphaproteobacteria Jannaschia formosa 12N15 [QPLJ] 151182 151265 + Tyr GTA [ENA] ¡û
>ENV09001873 ACQI01019484 Hydrothermal vent metagenome LCHCB.C1 387 304 - Pseudo GTA [ENA] ¡û
>W1511518669 JXYE01000002 Alphaproteobacteria Loktanella sp. S4079 [JXYE] 302258 302175 - Tyr GTA [ENA] ¡û
>W1610092028 CXSU01000005 Alphaproteobacteria Jannaschia donghaensis [CXSU] 686045 685962 - Pseudo GTA [ENA] ¡û
>W1610092901 CYSE01000001 Alphaproteobacteria Tropicibacter naphthalenivorans [CYSE] 649361 649278 - Pseudo GTA [ENA] ¡û
>W1610094194 CYTO01000009 Alphaproteobacteria Cognatishimia activa CECT 5113 [CYTO] 243291 243208 - Pseudo GTA [ENA] ¡û
>W1610095019 CYUE01000020 Alphaproteobacteria Cognatishimia activa CECT 5114 [CYUE] 522958 522875 - Pseudo GTA [ENA] ¡û
>W1610628544 LIGP01000007 Alphaproteobacteria Loktanella sp. 1ANDIMAR09 [LIGP] 155951 155868 - Pseudo GTA [ENA] ¡û
>W1610641296 LJAL01000008 Alphaproteobacteria Loktanella sp. 5RATIMAR09 [LJAL] 53413 53496 + Pseudo GTA [ENA] ¡û
>W1611013229 LXYJ01000017 Alphaproteobacteria Jannaschia sp. EhC01 [LXYJ] 48 131 + Pseudo GTA [ENA] ¡û
>W1710095385 CXSU01000005 Alphaproteobacteria Jannaschia donghaensis [CXSU] 686045 685962 - Pseudo GTA [ENA] ¡û
>W1710096156 CYSE01000001 Alphaproteobacteria Tropicibacter naphthalenivorans [CYSE] 649361 649278 - Pseudo GTA [ENA] ¡û
>W1710531928 FNPX01000018 Alphaproteobacteria Jannaschia faecimaris [FNPX] 35409 35326 - Pseudo GTA [ENA] ¡û
>W1710543099 FNZQ01000005 Alphaproteobacteria Jannaschia helgolandensis [FNZQ] 92352 92435 + Pseudo GTA [ENA] ¡û
>W1710565137 FORA01000001 Alphaproteobacteria Jannaschia pohangensis [FORA] 1071150 1071233 + Pseudo GTA [ENA] ¡û
>W1710574893 FOYP01000001 Alphaproteobacteria Yoonia tamlensis [FOYP] 799900 799817 - Pseudo GTA [ENA] ¡û
>W1710575789 FOZM01000001 Alphaproteobacteria Yoonia litorea [FOZM] 1667070 1667153 + Pseudo GTA [ENA] ¡û
>W1710585609 FQWM01000001 Alphaproteobacteria Cognatishimia maritima maritimus [FQWM] 788103 788186 + Pseudo GTA [ENA] ¡û
>W1710600096 FTPR01000001 Alphaproteobacteria Yoonia rosea [FTPR] 1315825 1315908 + Pseudo GTA [ENA] ¡û
>W1710606548 FWXX01000001 Alphaproteobacteria Tropicibacter naphthalenivorans [FWXX] 249581 249664 + Pseudo GTA [ENA] ¡û
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

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