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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Hydrothermal vent metagenome LCHCB.C1
Anticodon = TGT
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.306441 (1 seq.)
>ENV09001864
ACQI01017658
Hydrothermal vent metagenome LCHCB.C1
114
187
+
Thr
TGT
[ENA]
¡û
Identical group No.490058 (2 seq.)
>ENV09001684
ACQI01002148
Hydrothermal vent metagenome LCHCB.C1
1145
1070
-
Thr
TGT
[ENA]
¡û
>ENV09001738
ACQI01004116
Hydrothermal vent metagenome LCHCB.C1
807
732
-
Thr
TGT
[ENA]
¡û
Identical group No.490060 (1 seq.)
>ENV09001706
ACQI01003258
Hydrothermal vent metagenome LCHCB.C1
828
903
+
Thr
TGT
[ENA]
¡û
Identical group No.490068 (1 seq.)
>ENV09001733
ACQI01003985
Hydrothermal vent metagenome LCHCB.C1
484
559
+
Thr
TGT
[ENA]
¡û
Identical group No.490085 (1 seq.)
>ENV09001800
ACQI01008174
Hydrothermal vent metagenome LCHCB.C1
365
440
+
Thr
TGT
[ENA]
¡û
Identical group No.490086 (1 seq.)
>ENV09001803
ACQI01008781
Hydrothermal vent metagenome LCHCB.C1
184
109
-
Thr
TGT
[ENA]
¡û
Identical group No.490100 (2 seq.)
>WENV170447782
CEUY01393103
[CEUY] marine metagenome genome assembly TARA_123_MIX_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
649
724
+
Thr
TGT
[ENA]
¢þ
>ENV09001892
ACQI01022491
Hydrothermal vent metagenome LCHCB.C1
403
478
+
Thr
TGT
[ENA]
¡û
Identical group No.675841 (1 seq.)
>ENV09001664
ACQI01001524
Hydrothermal vent metagenome LCHCB.C1
631
557
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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