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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Line Islands Corals, microbial fraction of Christmas Atoll (SRP000133)
Anticodon = AGT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.285073 (19 seq.)
>WENV180356713
OBNL01011542
[OBNL] marine metagenome; ENVO:00002010
384
457
+
Thr
AGT
[ENA]
¢þ
>WENV180383851
OBOV01043739
[OBOV] marine metagenome; ENV:00002010
230
157
-
Thr
AGT
[ENA]
¢þ
>WENV180650590
OCSY01087179
[OCSY] marine metagenome; 30 L Plastic container
103
176
+
Thr
AGT
[ENA]
¢þ
>WENV181306675
OFIM01000391
[OFIM] marine metagenome; seawater
1871
1798
-
Thr
AGT
[ENA]
¢þ
>WENV181325003
OFLI01001469
[OFLI] seawater metagenome; seawater
1604
1677
+
Thr
AGT
[ENA]
¢þ
>WENV181385724
OFRJ01013059
[OFRJ] marine metagenome; seawater
181
108
-
Thr
AGT
[ENA]
¢þ
>WENV182551339
OJCC01001529
[OJCC] seawater metagenome; Sea water
262
189
-
Thr
AGT
[ENA]
¢þ
>WENV182552949
OJCQ01005869
[OJCQ] seawater metagenome; Sea water
156
229
+
Thr
AGT
[ENA]
¢þ
>WENV182554369
OJCU01002532
[OJCU] seawater metagenome; Sea water
1098
1171
+
Thr
AGT
[ENA]
¢þ
>WENV182559171
OJDO01002864
[OJDO] seawater metagenome; Sea water
1159
1086
-
Thr
AGT
[ENA]
¢þ
>WENV183054261
OLGT01000031
[OLGT] seawater metagenome; Sea water
1487
1560
+
Thr
AGT
[ENA]
¢þ
>WENV183618448
OOFO01001446
[OOFO] marine metagenome; seawater
1604
1677
+
Thr
AGT
[ENA]
¢þ
>WENV183629670
OOGQ01000707
[OOGQ] marine metagenome; seawater
994
921
-
Thr
AGT
[ENA]
¢þ
>ENV08000369
ABMC01029299
microbial fraction (100-045 micron) from water below the boundary layer (eg, crevices and benthic surfaces) of Christmas Atoll (Kirtimati; Northern Line Islands)
21
95
+
Thr
AGT
[ENA]
¡û
>ENV08000373
ABMC01043727
microbial fraction (100-045 micron) from water below the boundary layer (eg, crevices and benthic surfaces) of Christmas Atoll (Kirtimati; Northern Line Islands)
21
95
+
Thr
AGT
[ENA]
¡û
>WENV170458267
CEVB01060044
[CEVB] marine metagenome genome assembly TARA_124_SRF_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
218
291
+
Thr
AGT
[ENA]
¢þ
>WENV170569296
FLMP01164266
[FLMP] seawater metagenome; seawater
506
433
-
Thr
AGT
[ENA]
¢þ
>SRA1000350
SRR001041.179929
Line Islands Corals, microbial fraction of Christmas Atoll (SRP000133)
21
95
+
Thr
AGT
[SRA]
>SRA1000351
SRR001041.183475
Line Islands Corals, microbial fraction of Christmas Atoll (SRP000133)
21
95
+
Thr
AGT
[SRA]
Identical group No.439630 (2 seq.)
>ENV08000371
ABMC01030462
microbial fraction (100-045 micron) from water below the boundary layer (eg, crevices and benthic surfaces) of Christmas Atoll (Kirtimati; Northern Line Islands)
90
17
-
Thr
AGT
[ENA]
¡û
>SRA1000346
SRR001041.93274
Line Islands Corals, microbial fraction of Christmas Atoll (SRP000133)
90
17
-
Thr
AGT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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