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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Marine metagenome, Gulf of Maine surface waters
Anticodon = CTC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.242073 (30 seq.)
>WENV180590453
OCOT01021421
[OCOT] marine metagenome; ENVO:00002010
395
470
+
Glu
CTC
[ENA]
¢þ
>WENV181309262
OFIV01000436
[OFIV] marine metagenome; seawater
722
648
-
Glu
CTC
[ENA]
¢þ
>WENV181315711
OFJQ01003046
[OFJQ] marine metagenome; seawater
736
661
-
Glu
CTC
[ENA]
¢þ
>WENV181316431
OFJU01001649
[OFJU] marine metagenome; seawater
494
569
+
Glu
CTC
[ENA]
¢þ
>WENV181318677
OFKA01006586
[OFKA] marine metagenome; seawater
369
294
-
Glu
CTC
[ENA]
¢þ
>WENV181320675
OFKI01007082
[OFKI] marine metagenome; seawater
717
642
-
Glu
CTC
[ENA]
¢þ
>WENV181321890
OFKN01027616
[OFKN] marine metagenome; seawater
301
226
-
Glu
CTC
[ENA]
¢þ
>WENV181392561
OFRW01082065
[OFRW] seawater metagenome; seawater
282
207
-
Glu
CTC
[ENA]
¢þ
>WENV182560597
OJDU01009313
[OJDU] seawater metagenome; Sea water
600
526
-
Glu
CTC
[ENA]
¢þ
>WENV183622192
OOFV01011409
[OOFV] marine metagenome; seawater
568
493
-
Glu
CTC
[ENA]
¢þ
>WENV183626600
OOGJ01001135
[OOGJ] marine metagenome; seawater
636
561
-
Glu
CTC
[ENA]
¢þ
>WENV183627290
OOGK01086600
[OOGK] marine metagenome; seawater
282
207
-
Glu
CTC
[ENA]
¢þ
>WENV183630356
OOGS01005685
[OOGS] marine metagenome; seawater
538
613
+
Glu
CTC
[ENA]
¢þ
>WENV170294809
CESC01166077
[CESC] marine metagenome genome assembly TARA_078_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
998
1073
+
Glu
CTC
[ENA]
¢þ
>WENV170478525
CEVK01059717
[CEVK] marine metagenome genome assembly TARA_149_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
213
288
+
Glu
CTC
[ENA]
¢þ
>WENV170487154
CEVO01030807
[CEVO] marine metagenome genome assembly TARA_152_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
394
319
-
Glu
CTC
[ENA]
¢þ
>WENV170568888
FLMP01093129
[FLMP] seawater metagenome; seawater
503
578
+
Glu
CTC
[ENA]
¢þ
>WENV170616593
FUWD012893034
[FUWD] metagenome; unknown
306
232
-
Glu
CTC
[ENA]
¢þ
>WENV170619703
FUWD013019404
[FUWD] metagenome; unknown
516
442
-
Glu
CTC
[ENA]
¢þ
>WENV170627824
FUWD013237792
[FUWD] metagenome; unknown
516
442
-
Glu
CTC
[ENA]
¢þ
>WENV170763566
LWDU01012559
[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
1332
1406
+
Glu
CTC
[ENA]
¢þ
>WENV170763938
LWDU01025192
[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
1777
1703
-
Glu
CTC
[ENA]
¢þ
>WENV170952913
MEHZ011620443
[MEHZ] marine metagenome; marine surface water
433
359
-
Glu
CTC
[ENA]
¢þ
>WENV170952918
MEHZ011620906
[MEHZ] marine metagenome; marine surface water
1648
1573
-
Glu
CTC
[ENA]
¢þ
>WENV170953229
MEHZ011635007
[MEHZ] marine metagenome; marine surface water
1493
1567
+
Glu
CTC
[ENA]
¢þ
>ENV09004335
ADKQ01006593
Marine metagenome apWin_C1
814
739
-
Glu
CTC
[ENA]
¡û
>WENV11101379
AGBE01002123
Marine metagenome, Gulf of Maine surface waters
6199
6274
+
Glu
CTC
[ENA]
¡û
>WENV11101380
AGBE01002124
Marine metagenome, Gulf of Maine surface waters
2359
2433
+
Glu
CTC
[ENA]
¡û
>W1610597521
LFEY01000017
Nitrososphaerota
Thaumarchaeota archaeon casp-thauma3 [LFEY]
2786
2860
+
Glu
CTC
[ENA]
¡û
>W1610625314
LIAL01000003
Nitrososphaerota
Nitrosopumilus sp. BACL13 MAG-121220-bin23 [LIAL]
2542
2617
+
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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