tRNA genes clustered and arranged according to each identical group

Marine metagenome, Gulf of Maine surface waters

Anticodon = GGC

HIT: 2 Group(s).
Download Sequence Representative sequence of each cluster
View ClustalW result
Sort by Identical group No. Sort by the number of tRNAs in the Identical group
Select
 Sequence ID Genome ID
(or Accession No.)		 Phylum/Class
(Sample source for ENV)		 Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.271776 (53 seq.)
>A171000232 CP000866 Nitrososphaerota Nitrosopumilus maritimus SCM1 [CP000866] 224909 224983 + Ala GGC - ¡û
>A171003390 CP003842 Nitrososphaerota Candidatus Nitrosopumilus koreensis AR1 [CP003842] 190541 190615 + Ala GGC - ¡û
>A171005912 CP010868 Nitrososphaerota Nitrosopumilus piranensis D3C [CP010868] 536332 536406 + Ala GGC - ¡û
>A171006028 CP011070 Nitrososphaerota Nitrosopumilus adriaticus NF5 [CP011070] 1608192 1608118 - Ala GGC - ¡û
>WENV180052546 MPLU02306998 [MPLU] marine metagenome; 90 m water sample filtered on 0.2 um supor filter 984 1058 + Ala GGC [ENA] ¢þ
>WENV180053610 MPLV02029353 [MPLV] marine metagenome; 100 m water sample filtered on 0.2 um supor filter 48241 48315 + Ala GGC [ENA] ¢þ
>WENV180056021 MPLW02003985 [MPLW] marine metagenome; 110 m water sample filtered on 0.2 um supor filter 1145 1071 - Ala GGC [ENA] ¢þ
>WENV180063754 MPLX02373798 [MPLX] marine metagenome; 120 m water sample filtered on 0.2 um supor filter 40500 40574 + Ala GGC [ENA] ¢þ
>WENV180093128 MPMF02302275 [MPMF] marine metagenome; 120 m water sample prefiltered with 30 um filter, filtered on to 0.2 um supor filter 1346 1420 + Ala GGC [ENA] ¢þ
>WENV181309270 OFIV01000611 [OFIV] marine metagenome; seawater 1454 1528 + Ala GGC [ENA] ¢þ
>WENV181309706 OFIX01001395 [OFIX] marine metagenome; seawater 937 1011 + Ala GGC [ENA] ¢þ
>WENV181312872 OFJD01004151 [OFJD] marine metagenome; seawater 565 639 + Ala GGC [ENA] ¢þ
>WENV181315883 OFJR01001599 [OFJR] marine metagenome; seawater 478 404 - Ala GGC [ENA] ¢þ
>WENV181317095 OFJX01000780 [OFJX] marine metagenome; seawater 1459 1533 + Ala GGC [ENA] ¢þ
>WENV181320141 OFKG01000362 [OFKG] marine metagenome; seawater 3395 3321 - Ala GGC [ENA] ¢þ
>WENV181321752 OFKN01003421 [OFKN] marine metagenome; seawater 294 220 - Ala GGC [ENA] ¢þ
>WENV181392461 OFRW01053267 [OFRW] seawater metagenome; seawater 247 173 - Ala GGC [ENA] ¢þ
>WENV182560696 OJDU01026476 [OJDU] seawater metagenome; Sea water 401 327 - Ala GGC [ENA] ¢þ
>WENV183616325 OOED01002591 [OOED] marine metagenome; seawater 320 246 - Ala GGC [ENA] ¢þ
>WENV183621898 OOFV01000511 [OOFV] marine metagenome; seawater 4394 4468 + Ala GGC [ENA] ¢þ
>WENV183626573 OOGJ01000161 [OOGJ] marine metagenome; seawater 2456 2530 + Ala GGC [ENA] ¢þ
>WENV183627191 OOGK01055708 [OOGK] marine metagenome; seawater 247 173 - Ala GGC [ENA] ¢þ
>WENV183793324 PVBE010004353 [PVBE] marine metagenome; water 39798 39724 - Ala GGC [ENA] ¢þ
>WENV170294723 CESC01142280 [CESC] marine metagenome genome assembly TARA_078_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 298 224 - Ala GGC [ENA] ¢þ
>WENV170297152 CESE01112654 [CESE] marine metagenome genome assembly TARA_085_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 546 620 + Ala GGC [ENA] ¢þ
>WENV170323430 CESR01337293 [CESR] marine metagenome genome assembly TARA_100_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 2 76 + Ala GGC [ENA] ¢þ
>WENV170389117 CETZ01239207 [CETZ] marine metagenome genome assembly TARA_132_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 472 398 - Ala GGC [ENA] ¢þ
>WENV170394841 CEUC01061048 [CEUC] marine metagenome genome assembly TARA_137_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 35195 35269 + Ala GGC [ENA] ¢þ
>WENV170488488 CEVO01219090 [CEVO] marine metagenome genome assembly TARA_152_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 229 303 + Ala GGC [ENA] ¢þ
>WENV170572360 FLOH01000772 [FLOH] marine metagenome; water 35414 35488 + Ala GGC [ENA] ¢þ
>WENV170616888 FUWD012907159 [FUWD] metagenome; unknown 1034 960 - Ala GGC [ENA] ¢þ
>WENV170620450 FUWD013031850 [FUWD] metagenome; unknown 1536 1462 - Ala GGC [ENA] ¢þ
>WENV170625099 FUWD013191633 [FUWD] metagenome; unknown 884 810 - Ala GGC [ENA] ¢þ
>WENV170628593 FUWD013249346 [FUWD] metagenome; unknown 1536 1462 - Ala GGC [ENA] ¢þ
>WENV170633356 FUWD013394914 [FUWD] metagenome; unknown 884 810 - Ala GGC [ENA] ¢þ
>WENV170701583 LKGT01011079 [LKGT] marine sediment metagenome; sediment sample collected at the water-sediment interface from the South Pacific gyre, IODP 11741 11817 + Ala GGC [ENA] ¢þ
>WENV170884863 MDTC01191540 [MDTC] marine metagenome; seawater 40008 39934 - Ala GGC [ENA] ¢þ
>WENV170951309 MEHZ011547408 [MEHZ] marine metagenome; marine surface water 821 747 - Ala GGC [ENA] ¢þ
>W1910126228 BGKI01000002 Nitrososphaerota Nitrosopumilus zosterae sp. NM25 [BGKI] 241098 241024 - Ala GGC [ENA] ¡û
>W1910572954 JNVL01000001 Nitrososphaerota Marine Group I thaumarchaeote SCGC AAA799-E16 [JNVL] 57277 57203 - Ala GGC [ENA] ¡û
>W1910573206 JOSY01000006 Nitrososphaerota Marine Group I thaumarchaeote SCGC AAA799-D11 [JOSY] 47001 47075 + Ala GGC [ENA] ¡û
>W1910573253 JOTA01000016 Nitrososphaerota Marine Group I thaumarchaeote SCGC AAA799-B03 [JOTA] 13300 13226 - Ala GGC [ENA] ¡û
>W1910573296 JOTD01000033 Nitrososphaerota Marine Group I thaumarchaeote SCGC RSA3 [JOTD] 42945 43019 + Ala GGC [ENA] ¡û
>ENV09004280 ADKQ01001453 Marine metagenome apWin_C1 815 741 - Ala GGC [ENA] ¡û
>WENV11101341 AGBE01001898 Marine metagenome, Gulf of Maine surface waters 469 395 - Ala GGC [ENA] ¡û
>WENV11101366 AGBE01002037 Marine metagenome, Gulf of Maine surface waters 1074 1000 - Ala GGC [ENA] ¡û
>W1610000537 ABEO01000001 Nitrososphaerota Nitrosopumilus maritimus maritimus SCM1 [ABEO] 1130785 1130859 + Ala GGC [ENA] ¡û
>W1610003108 AEXL02000138 Nitrososphaerota Candidatus Nitrosopumilus salaria salaria BD31 [AEXL] 24516 24590 + Ala GGC [ENA] ¡û
>W1610005415 AJVI01000012 Nitrososphaerota Nitrosopumilus sp. SJ [AJVI] 20920 20996 + Ala GGC [ENA] ¡û
>W1610005430 AJVJ01000015 Nitrososphaerota Nitrosopumilus sp. AR [AJVJ] 128940 129016 + Ala GGC [ENA] ¡û
>W1610599343 LFLC01000025 Nitrososphaerota Nitrosopumilus sp. LS_AOA [LFLC] 133359 133285 - Ala GGC [ENA] ¡û
>W1610617252 LGTD01000422 Nitrososphaerota Candidatus Nitrosopumilus sp. DDS1 [LGTD] 597 673 + Ala GGC [ENA] ¡û
>W1610625338 LIAL01000075 Nitrososphaerota Nitrosopumilus sp. BACL13 MAG-121220-bin23 [LIAL] 633 559 - Ala GGC [ENA] ¡û
Identical group No.281135 (30 seq.)
>A171007065 CP021324 Nitrososphaerota Candidatus Nitrosomarinus catalina SPOT01 [CP021324] 1158870 1158796 - Ala GGC - ¡û
>WENV180050481 MPLU02143318 [MPLU] marine metagenome; 90 m water sample filtered on 0.2 um supor filter 569 495 - Ala GGC [ENA] ¢þ
>WENV180115596 OAPT01010285 [OAPT] marine metagenome; seawater 491 565 + Ala GGC [ENA] ¢þ
>WENV181092487 OEBK01003259 [OEBK] marine metagenome; ENVO:00002010 for 'seawater 380 306 - Ala GGC [ENA] ¢þ
>WENV183800316 PVBE010578899 [PVBE] marine metagenome; water 915 840 - Ala GGC [ENA] ¢þ
>WENV170114140 CENF01152256 [CENF] marine metagenome genome assembly TARA_004_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 2201 2127 - Ala GGC [ENA] ¢þ
>WENV170145094 CENY01228990 [CENY] marine metagenome genome assembly TARA_032_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 258 184 - Ala GGC [ENA] ¢þ
>WENV170154959 CEOF01370791 [CEOF] marine metagenome genome assembly TARA_018_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 504 430 - Ala GGC [ENA] ¢þ
>WENV170240498 CEQN01130751 [CEQN] marine metagenome genome assembly TARA_078_DCM_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 531 457 - Ala GGC [ENA] ¢þ
>WENV170271931 CERK01020877 [CERK] marine metagenome genome assembly TARA_066_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 480 554 + Ala GGC [ENA] ¢þ
>WENV170475003 CEVH01190766 [CEVH] marine metagenome genome assembly TARA_141_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1599 1525 - Ala GGC [ENA] ¢þ
>WENV170493015 CEVQ01302387 [CEVQ] marine metagenome genome assembly TARA_148b_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 405 331 - Ala GGC [ENA] ¢þ
>WENV170504412 CEVV01263756 [CEVV] marine metagenome genome assembly TARA_152_MIX_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 111 37 - Ala GGC [ENA] ¢þ
>WENV170504783 CEVW01003183 [CEVW] marine metagenome genome assembly TARA_149_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 498 572 + Ala GGC [ENA] ¢þ
>WENV170507619 CEVX01069176 [CEVX] marine metagenome genome assembly TARA_152_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 405 331 - Ala GGC [ENA] ¢þ
>WENV170532724 CEWO01063507 [CEWO] marine metagenome genome assembly TARA_145_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 763 689 - Ala GGC [ENA] ¢þ
>WENV170598738 FUWD010047160 [FUWD] metagenome; unknown 282 356 + Ala GGC [ENA] ¢þ
>WENV170616344 FUWD012885537 [FUWD] metagenome; unknown 355 429 + Ala GGC [ENA] ¢þ
>WENV170616345 FUWD012885538 [FUWD] metagenome; unknown 78 152 + Ala GGC [ENA] ¢þ
>WENV170616825 FUWD012904309 [FUWD] metagenome; unknown 2371 2297 - Ala GGC [ENA] ¢þ
>WENV170619765 FUWD013020676 [FUWD] metagenome; unknown 1857 1783 - Ala GGC [ENA] ¢þ
>WENV170627886 FUWD013238963 [FUWD] metagenome; unknown 1857 1783 - Ala GGC [ENA] ¢þ
>WENV170750232 LUMG01001691 [LUMG] marine metagenome; Red Sea water column Station 34 - depth 50m 2023 1949 - Ala GGC [ENA] ¢þ
>WENV170756529 LUMP01000070 [LUMP] marine metagenome; Red Sea water column Station 12 - depth 47m 25166 25240 + Ala GGC [ENA] ¢þ
>WENV170806791 MDSW01087031 [MDSW] marine metagenome; seawater 3491 3417 - Ala GGC [ENA] ¢þ
>WENV11101330 AGBE01001707 Marine metagenome, Gulf of Maine surface waters 195 269 + Ala GGC [ENA] ¡û
>WENV11101357 AGBE01002017 Marine metagenome, Gulf of Maine surface waters 7806 7732 - Ala GGC [ENA] ¡û
>WENV11101358 AGBE01002018 Marine metagenome, Gulf of Maine surface waters 574 500 - Ala GGC [ENA] ¡û
>WENV046996 AACY022633136 Marine microbial communities from Global Ocean Sampling (GOS) 109 31 - Ala GGC [ENA]
>W1610855523 LQMW01000019 Nitrososphaerota Nitrosopumilus sp. Nsub [LQMW] 167585 167511 - Ala GGC [ENA] ¡û
Select
 Sequence ID Genome ID
(or Accession No.)		 Phylum/Class
(Sample source for ENV)		 Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

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