tRNA genes clustered and arranged according to each identical group

Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)

Anticodon = TAG

HIT: 4 Group(s).
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Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.164417 (4 seq.)
>SRA1006137 SRR016610.41032 Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749) 187 102 - Leu TAG [SRA]
>SRA1006151 SRR016610.95390 Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749) 97 12 - Leu TAG [SRA]
>SRA1006158 SRR016610.113660 Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749) 97 12 - Leu TAG [SRA]
>SRA1006178 SRR016610.155880 Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749) 97 12 - Leu TAG [SRA]
Identical group No.186368 (43 seq.)
>W1710785560 LJHY01000031 Alphaproteobacteria Novosphingobium sp. AAP83 [LJHY] 57289 57373 + Leu TAG [ENA] ¡û
>W1710997887 LQCK02000023 Alphaproteobacteria Sphingomonas melonis TY [LQCK] 91226 91310 + Leu TAG [ENA] ¡û
>C171063764 CP017578 Alphaproteobacteria Sphingomonas melonis TY [CP017578] 3675841 3675925 + Leu TAG - ¡û
>W131158679 AQUJ01000001 Alphaproteobacteria Sphingomonas melonis C3 [AQUJ] 1025360 1025444 + Leu TAG [ENA] ¡û
>W131163487 AQZT01000001 Alphaproteobacteria Sphingomonas melonis DAPP-PG 224 [AQZT] 3503984 3503900 - Leu TAG [ENA] ¡û
>W131213734 ATTG01000001 Alphaproteobacteria Sphingomonas melonis FR1 [ATTG] 2601641 2601725 + Leu TAG [ENA] ¡û
>WENV181370998 OFQU01005427 [OFQU] wastewater metagenome; Exp Tend CN 90WW 1943 1859 - Leu TAG [ENA] ¢þ
>W141484714 JFYV01000012 Alphaproteobacteria Sphingomonas sp. RIT328 [JFYV] 282225 282309 + Leu TAG [ENA] ¡û
>C181089098 CP023705 Alphaproteobacteria Sphingomonas melonis ZJ26 [CP023705] 3402867 3402951 + Leu TAG - ¡û
>SRA1002910 SRR002326.96725 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 98 182 + Leu TAG [SRA]
>SRA1003454 SRR002326.477928 The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240) 98 182 + Leu TAG [SRA]
>SRA1006135 SRR016610.36933 Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749) 2 86 + Leu TAG [SRA]
>SRA1006138 SRR016610.44136 Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749) 141 57 - Leu TAG [SRA]
>SRA1006143 SRR016610.51862 Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749) 107 23 - Leu TAG [SRA]
>SRA1006147 SRR016610.74871 Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749) 96 12 - Leu TAG [SRA]
>SRA1006153 SRR016610.102536 Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749) 3 87 + Leu TAG [SRA]
>SRA1006156 SRR016610.109187 Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749) 3 87 + Leu TAG [SRA]
>SRA1006157 SRR016610.112354 Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749) 91 175 + Leu TAG [SRA]
>SRA1006164 SRR016610.124158 Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749) 96 12 - Leu TAG [SRA]
>SRA1006166 SRR016610.126301 Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749) 3 87 + Leu TAG [SRA]
>SRA1006167 SRR016610.126440 Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749) 96 12 - Leu TAG [SRA]
>SRA1006170 SRR016610.133591 Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749) 127 211 + Leu TAG [SRA]
>SRA1006173 SRR016610.139159 Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749) 214 130 - Leu TAG [SRA]
>SRA1006174 SRR016610.141186 Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749) 127 211 + Leu TAG [SRA]
>SRA1006177 SRR016610.152486 Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749) 96 12 - Leu TAG [SRA]
>SRA1006182 SRR016610.162182 Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749) 128 212 + Leu TAG [SRA]
>SRA1006187 SRR016610.185387 Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749) 15 99 + Leu TAG [SRA]
>SRA1006192 SRR016610.206614 Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749) 42 126 + Leu TAG [SRA]
>SRA1006200 SRR016610.234937 Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749) 106 22 - Leu TAG [SRA]
>SRA1006203 SRR016610.250605 Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749) 42 126 + Leu TAG [SRA]
>SRA1006210 SRR016610.262775 Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749) 7 91 + Leu TAG [SRA]
>SRA1006212 SRR016610.272988 Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749) 7 91 + Leu TAG [SRA]
>SRA1006215 SRR016610.299643 Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749) 7 91 + Leu TAG [SRA]
>W1810537927 QDFN01000001 Alphaproteobacteria Sphingomonas sp. TPD3009 [QDFN] 814718 814802 + Leu TAG [ENA] ¡û
>W1810538194 QDFQ01000001 Actinomycetota Arthrobacter sp. TPD3018 [QDFQ] 814858 814942 + Leu TAG [ENA] ¡û
>W1810538301 QDFS01000002 Alphaproteobacteria Sphingomonas melonis TPD3008 [QDFS] 856656 856572 - Leu TAG [ENA] ¡û
>SRA1015882 SRR023846.238597 Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120) 18 102 + Leu TAG [SRA]
>C151054361 CP009571 Alphaproteobacteria Sphingomonas taxi ATCC 55669 [CP009571] 1903584 1903500 - Leu TAG [Ensembl] ¡û
>W1511511956 JXTP01000026 Alphaproteobacteria Sphingomonas melonis 30a [JXTP] 80054 79970 - Leu TAG [ENA] ¡û
>C161089262 CP015521 Alphaproteobacteria Sphingomonas sp. NIC1 [CP015521] 2550927 2551011 + Leu TAG [Ensembl] ¡û
>W1610649366 LJHY01000031 Alphaproteobacteria Novosphingobium sp. AAP83 [LJHY] 57289 57373 + Leu TAG [ENA] ¡û
>W1610852616 LQCK02000023 Alphaproteobacteria Sphingomonas melonis TY [LQCK] 91226 91310 + Leu TAG [ENA] ¡û
>W1710573582 FOXP01000002 Alphaproteobacteria Sphingomonas rubra [FOXP] 287924 288008 + Leu TAG [ENA] ¡û
Identical group No.196047 (1 seq.)
>SRA1006171 SRR016610.134333 Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749) 142 58 - Leu TAG [SRA]
Identical group No.222301 (3 seq.)
>SRA1006149 SRR016610.80669 Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749) 92 175 + Leu TAG [SRA]
>SRA1006172 SRR016610.138334 Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749) 141 58 - Leu TAG [SRA]
>SRA1006222 SRR016610.322430 Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749) 120 37 - Leu TAG [SRA]
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

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