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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
Anticodon = TAG
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.164417 (4 seq.)
>SRA1006137
SRR016610.41032
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
187
102
-
Leu
TAG
[SRA]
>SRA1006151
SRR016610.95390
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
97
12
-
Leu
TAG
[SRA]
>SRA1006158
SRR016610.113660
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
97
12
-
Leu
TAG
[SRA]
>SRA1006178
SRR016610.155880
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
97
12
-
Leu
TAG
[SRA]
Identical group No.186368 (43 seq.)
>W1710785560
LJHY01000031
Alphaproteobacteria
Novosphingobium sp. AAP83 [LJHY]
57289
57373
+
Leu
TAG
[ENA]
¡û
>W1710997887
LQCK02000023
Alphaproteobacteria
Sphingomonas melonis TY [LQCK]
91226
91310
+
Leu
TAG
[ENA]
¡û
>C171063764
CP017578
Alphaproteobacteria
Sphingomonas melonis TY [CP017578]
3675841
3675925
+
Leu
TAG
-
¡û
>W131158679
AQUJ01000001
Alphaproteobacteria
Sphingomonas melonis C3 [AQUJ]
1025360
1025444
+
Leu
TAG
[ENA]
¡û
>W131163487
AQZT01000001
Alphaproteobacteria
Sphingomonas melonis DAPP-PG 224 [AQZT]
3503984
3503900
-
Leu
TAG
[ENA]
¡û
>W131213734
ATTG01000001
Alphaproteobacteria
Sphingomonas melonis FR1 [ATTG]
2601641
2601725
+
Leu
TAG
[ENA]
¡û
>WENV181370998
OFQU01005427
[OFQU] wastewater metagenome; Exp Tend CN 90WW
1943
1859
-
Leu
TAG
[ENA]
¢þ
>W141484714
JFYV01000012
Alphaproteobacteria
Sphingomonas sp. RIT328 [JFYV]
282225
282309
+
Leu
TAG
[ENA]
¡û
>C181089098
CP023705
Alphaproteobacteria
Sphingomonas melonis ZJ26 [CP023705]
3402867
3402951
+
Leu
TAG
-
¡û
>SRA1002910
SRR002326.96725
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
98
182
+
Leu
TAG
[SRA]
>SRA1003454
SRR002326.477928
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
98
182
+
Leu
TAG
[SRA]
>SRA1006135
SRR016610.36933
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
2
86
+
Leu
TAG
[SRA]
>SRA1006138
SRR016610.44136
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
141
57
-
Leu
TAG
[SRA]
>SRA1006143
SRR016610.51862
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
107
23
-
Leu
TAG
[SRA]
>SRA1006147
SRR016610.74871
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
96
12
-
Leu
TAG
[SRA]
>SRA1006153
SRR016610.102536
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
3
87
+
Leu
TAG
[SRA]
>SRA1006156
SRR016610.109187
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
3
87
+
Leu
TAG
[SRA]
>SRA1006157
SRR016610.112354
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
91
175
+
Leu
TAG
[SRA]
>SRA1006164
SRR016610.124158
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
96
12
-
Leu
TAG
[SRA]
>SRA1006166
SRR016610.126301
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
3
87
+
Leu
TAG
[SRA]
>SRA1006167
SRR016610.126440
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
96
12
-
Leu
TAG
[SRA]
>SRA1006170
SRR016610.133591
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
127
211
+
Leu
TAG
[SRA]
>SRA1006173
SRR016610.139159
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
214
130
-
Leu
TAG
[SRA]
>SRA1006174
SRR016610.141186
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
127
211
+
Leu
TAG
[SRA]
>SRA1006177
SRR016610.152486
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
96
12
-
Leu
TAG
[SRA]
>SRA1006182
SRR016610.162182
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
128
212
+
Leu
TAG
[SRA]
>SRA1006187
SRR016610.185387
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
15
99
+
Leu
TAG
[SRA]
>SRA1006192
SRR016610.206614
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
42
126
+
Leu
TAG
[SRA]
>SRA1006200
SRR016610.234937
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
106
22
-
Leu
TAG
[SRA]
>SRA1006203
SRR016610.250605
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
42
126
+
Leu
TAG
[SRA]
>SRA1006210
SRR016610.262775
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
7
91
+
Leu
TAG
[SRA]
>SRA1006212
SRR016610.272988
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
7
91
+
Leu
TAG
[SRA]
>SRA1006215
SRR016610.299643
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
7
91
+
Leu
TAG
[SRA]
>W1810537927
QDFN01000001
Alphaproteobacteria
Sphingomonas sp. TPD3009 [QDFN]
814718
814802
+
Leu
TAG
[ENA]
¡û
>W1810538194
QDFQ01000001
Actinomycetota
Arthrobacter sp. TPD3018 [QDFQ]
814858
814942
+
Leu
TAG
[ENA]
¡û
>W1810538301
QDFS01000002
Alphaproteobacteria
Sphingomonas melonis TPD3008 [QDFS]
856656
856572
-
Leu
TAG
[ENA]
¡û
>SRA1015882
SRR023846.238597
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
18
102
+
Leu
TAG
[SRA]
>C151054361
CP009571
Alphaproteobacteria
Sphingomonas taxi ATCC 55669 [CP009571]
1903584
1903500
-
Leu
TAG
[Ensembl]
¡û
>W1511511956
JXTP01000026
Alphaproteobacteria
Sphingomonas melonis 30a [JXTP]
80054
79970
-
Leu
TAG
[ENA]
¡û
>C161089262
CP015521
Alphaproteobacteria
Sphingomonas sp. NIC1 [CP015521]
2550927
2551011
+
Leu
TAG
[Ensembl]
¡û
>W1610649366
LJHY01000031
Alphaproteobacteria
Novosphingobium sp. AAP83 [LJHY]
57289
57373
+
Leu
TAG
[ENA]
¡û
>W1610852616
LQCK02000023
Alphaproteobacteria
Sphingomonas melonis TY [LQCK]
91226
91310
+
Leu
TAG
[ENA]
¡û
>W1710573582
FOXP01000002
Alphaproteobacteria
Sphingomonas rubra [FOXP]
287924
288008
+
Leu
TAG
[ENA]
¡û
Identical group No.196047 (1 seq.)
>SRA1006171
SRR016610.134333
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
142
58
-
Leu
TAG
[SRA]
Identical group No.222301 (3 seq.)
>SRA1006149
SRR016610.80669
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
92
175
+
Leu
TAG
[SRA]
>SRA1006172
SRR016610.138334
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
141
58
-
Leu
TAG
[SRA]
>SRA1006222
SRR016610.322430
Metagenomic analysis of deep-sea hydrothermal vent prokaryotes (SRP000749)
120
37
-
Leu
TAG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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