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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
Anticodon = CAA
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.74537 (3 seq.)
>WENV170017880
BARU01036308
[BARU] marine sediment metagenome; marine subsurface sediment at 18.6 meters below seafloor (mbsf), off the Shimokita Peninsula
210
299
+
Leu
CAA
[ENA]
¢þ
>WENV170647812
JREQ01005867
[JREQ] marine sediment metagenome; clay from marine sediments 31 meters below sea floor depth collected from drilling site U1352C
1928
2016
+
Leu
CAA
[ENA]
¢þ
>SRA1002354
SRR001322.61757
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
107
21
-
Leu
CAA
[SRA]
Identical group No.80318 (1 seq.)
>SRA1002518
SRR001325.76304
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
93
7
-
Leu
CAA
[SRA]
Identical group No.101941 (1 seq.)
>SRA1002458
SRR001324.26299
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
25
112
+
Leu
CAA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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