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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
Anticodon = GCA
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.381062 (2 seq.)
>SRA1002483
SRR001324.73535
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
107
31
-
Cys
GCA
[SRA]
>SRA1002484
SRR001324.74437
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
107
31
-
Cys
GCA
[SRA]
Identical group No.429107 (1 seq.)
>SRA1002335
SRR001322.15936
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
14
90
+
Cys
GCA
[SRA]
Identical group No.429111 (1 seq.)
>SRA1002364
SRR001322.77033
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
1
74
+
Cys
GCA
[SRA]
Identical group No.628135 (1 seq.)
>SRA1002365
SRR001322.80998
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
86
13
-
Cys
GCA
[SRA]
Identical group No.639913 (1 seq.)
>SRA1002399
SRR001323.53235
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
34
106
+
Cys
GCA
[SRA]
Identical group No.639915 (1 seq.)
>SRA1002430
SRR001323.119511
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
77
2
-
Cys
GCA
[SRA]
Identical group No.639918 (1 seq.)
>SRA1002442
SRR001323.153954
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
30
105
+
Cys
GCA
[SRA]
Identical group No.726864 (1 seq.)
>SRA1002478
SRR001324.64585
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
96
22
-
Cys
GCA
[SRA]
Identical group No.771058 (1 seq.)
>SRA1002401
SRR001323.54290
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
18
92
+
Cys
GCA
[SRA]
Identical group No.771059 (1 seq.)
>SRA1002408
SRR001323.63581
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
16
89
+
Cys
GCA
[SRA]
Identical group No.812642 (1 seq.)
>SRA1002459
SRR001324.26909
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
40
110
+
Cys
GCA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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