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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
Anticodon = GCT
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.10538 (1 seq.)
>SRA1002476
SRR001324.61091
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
90
-1
-
Ser
GCT
[SRA]
Identical group No.108909 (1 seq.)
>SRA1002369
SRR001322.95722
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
96
9
-
Ser
GCT
[SRA]
Identical group No.176343 (1 seq.)
>SRA1002374
SRR001322.113002
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
28
110
+
Ser
GCT
[SRA]
Identical group No.213171 (1 seq.)
>SRA1002355
SRR001322.63642
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
103
20
-
Ser
GCT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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