This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
Anticodon = GGT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.298713 (18 seq.)
>W1710798762
LJTX01000041
Chloroflexota
Dehalococcoidia bacterium SG8_51_3 [LJTX]
5897
5969
+
Thr
GGT
[ENA]
¡û
>WENV180371967
OBOI01022175
[OBOI] sediment metagenome; sediment
419
347
-
Thr
GGT
[ENA]
¢þ
>WENV181409120
OGCI01000002
[OGCI] hot springs metagenome; Hot spring water
128969
128896
-
Thr
GGT
[ENA]
¢þ
>WENV183514791
OMKS01032109
[OMKS] sediment metagenome; hot spring sediment
2289
2217
-
Thr
GGT
[ENA]
¢þ
>WENV183662692
ORJL010217021
[ORJL] groundwater metagenome; groundwater
4627
4702
+
Thr
GGT
[ENA]
¢þ
>WENV183669097
ORJL010808210
[ORJL] groundwater metagenome; groundwater
3262
3187
-
Thr
GGT
[ENA]
¢þ
>WENV183678005
ORJL011824652
[ORJL] groundwater metagenome; groundwater
128
203
+
Thr
GGT
[ENA]
¢þ
>WENV183703583
PDVJ01024723
[PDVJ] alkali sediment metagenome; glacial lake sediment
1169
1242
+
Thr
GGT
[ENA]
¢þ
>WENV183797278
PVBE010321217
[PVBE] marine metagenome; water
1240
1168
-
Thr
GGT
[ENA]
¢þ
>WENV183806827
PVBE011149714
[PVBE] marine metagenome; water
20336
20264
-
Thr
GGT
[ENA]
¢þ
>WENV183811864
PVBE011623111
[PVBE] marine metagenome; water
3749
3676
-
Thr
GGT
[ENA]
¢þ
>WENV170018086
BARV01011114
[BARV] marine sediment metagenome; marine subsurface sediment at 48.5 meters below seafloor (mbsf), off the Shimokita Peninsula
28
101
+
Thr
GGT
[ENA]
¢þ
>WENV170209635
CEPV01076175
[CEPV] marine metagenome genome assembly TARA_039_MES_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1289
1216
-
Thr
GGT
[ENA]
¢þ
>WENV170225121
CEQE01110321
[CEQE] marine metagenome genome assembly TARA_037_MES_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
242
314
+
Thr
GGT
[ENA]
¢þ
>WENV170383434
CETX01108807
[CETX] marine metagenome genome assembly TARA_138_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
235
307
+
Thr
GGT
[ENA]
¢þ
>WENV170720224
LSQX01145255
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
12057
12129
+
Thr
GGT
[ENA]
¢þ
>SRA1002392
SRR001323.41140
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
17
89
+
Thr
GGT
[SRA]
>W1610662719
LJTX01000041
Chloroflexota
Dehalococcoidia bacterium SG8_51_3 [LJTX]
5897
5969
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK