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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
Anticodon = TGA
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.44642 (1 seq.)
>SRA1002420
SRR001323.96970
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
114
25
-
Ser
TGA
[SRA]
Identical group No.85878 (2 seq.)
>SRA1002398
SRR001323.53117
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
91
5
-
Ser
TGA
[SRA]
>SRA1002414
SRR001323.83834
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
91
5
-
Ser
TGA
[SRA]
Identical group No.85879 (1 seq.)
>SRA1002432
SRR001323.131901
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
102
14
-
Ser
TGA
[SRA]
Identical group No.100520 (1 seq.)
>SRA1002514
SRR001325.70904
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
1
88
+
Ser
TGA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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