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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
Anticodon = TGC
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.250633 (2 seq.)
>SRA1002550
SRR001326.56401
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
98
21
-
Ala
TGC
[SRA]
>W1610629279
LIHK01000014
Unclassified
Candidatus Bathyarchaeota archaeon BA2 [LIHK]
61900
61825
-
Ala
TGC
[ENA]
¡û
Identical group No.478007 (4 seq.)
>WENV170018235
BARV01029118
[BARV] marine sediment metagenome; marine subsurface sediment at 48.5 meters below seafloor (mbsf), off the Shimokita Peninsula
412
337
-
Ala
TGC
[ENA]
¢þ
>WENV170209783
CEPV01085588
[CEPV] marine metagenome genome assembly TARA_039_MES_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
768
843
+
Ala
TGC
[ENA]
¢þ
>SRA1002404
SRR001323.59359
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
19
93
+
Ala
TGC
[SRA]
>SRA1002480
SRR001324.71539
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
75
1
-
Ala
TGC
[SRA]
Identical group No.554066 (3 seq.)
>W09109897
ABUQ01000006
Thermomicrobiota
Sphaerobacter thermophilus DSM 20745 [ABUQ]
26760
26835
+
Ala
TGC
[ENA]
¡û
>SRA1002363
SRR001322.72719
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
92
18
-
Ala
TGC
[SRA]
>C10112704
CP001823
Thermomicrobiota
Sphaerobacter thermophilus DSM 20745 [CP001823, CP001824]
581404
581479
+
Ala
TGC
[Ensembl]
¡û
Identical group No.628924 (2 seq.)
>W1711584124
MNYD01000090
Chloroflexota
Dehalococcoidia bacterium CG2_30_46_19 [MNYD]
2778
2705
-
Ala
TGC
[ENA]
¡û
>SRA1002386
SRR001323.31007
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
16
89
+
Ala
TGC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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