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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
Anticodon = TGG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.244003 (4 seq.)
>WENV180036354
FVAA010033580
[FVAA] soil metagenome; Soil
1844
1921
+
Pro
TGG
[ENA]
¢þ
>WENV170647697
JREQ01002581
[JREQ] marine sediment metagenome; clay from marine sediments 31 meters below sea floor depth collected from drilling site U1352C
10679
10602
-
Pro
TGG
[ENA]
¢þ
>WENV170647814
JREQ01005903
[JREQ] marine sediment metagenome; clay from marine sediments 31 meters below sea floor depth collected from drilling site U1352C
3185
3108
-
Pro
TGG
[ENA]
¢þ
>SRA1002348
SRR001322.50275
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
3
80
+
Pro
TGG
[SRA]
Identical group No.252606 (2 seq.)
>SRA1002438
SRR001323.143851
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
93
16
-
Pro
TGG
[SRA]
>W1610629277
LIHK01000013
Unclassified
Candidatus Bathyarchaeota archaeon BA2 [LIHK]
11764
11687
-
Pro
TGG
[ENA]
¡û
Identical group No.500458 (3 seq.)
>WENV183515337
OMKS01057643
[OMKS] sediment metagenome; hot spring sediment
1098
1173
+
Pro
TGG
[ENA]
¢þ
>WENV170647901
JRER01001080
[JRER] marine sediment metagenome; clay from marine sediments 136 meters below sea floor depth collected from drilling site U1352C
6636
6711
+
Pro
TGG
[ENA]
¢þ
>SRA1002378
SRR001322.119773
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
1
76
+
Pro
TGG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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