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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
Anticodon = TGT
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.337561 (1 seq.)
>SRA1002546
SRR001326.45406
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
116
40
-
Thr
TGT
[SRA]
Identical group No.429112 (1 seq.)
>SRA1002372
SRR001322.108536
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
115
39
-
Thr
TGT
[SRA]
Identical group No.573346 (2 seq.)
>SRA1002446
SRR001324.6395
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
1
73
+
Thr
TGT
[SRA]
>SRA1002447
SRR001324.6417
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
1
73
+
Thr
TGT
[SRA]
Identical group No.628132 (1 seq.)
>SRA1002343
SRR001322.36815
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
92
20
-
Thr
TGT
[SRA]
Identical group No.726861 (1 seq.)
>SRA1002464
SRR001324.39147
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
85
11
-
Thr
TGT
[SRA]
Identical group No.761289 (1 seq.)
>SRA1002333
SRR001322.11634
Metagenomic signatures of the Peru Margin subseafloor biosphere (SRP000183)
15
87
+
Thr
TGT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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