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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Mine drainage metagenome Contig1
Anticodon = CGA
HIT:
6 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.50217 (4 seq.)
>W141000034
AADL01000792
Unclassified
mine drainage metagenome Group III [AADL]
428
339
-
Ser
CGA
[ENA]
¡û
>W09132227
ACNP01000072
Unclassified
mine drainage metagenome ferrodiazotrophum [ACNP]
9853
9942
+
Ser
CGA
[ENA]
¡û
>ENV09002238
ACXJ01011403
Mine drainage metagenome Contig1
16565
16476
-
Ser
CGA
[ENA]
¡û
>WENV077042
AADL01000792
Acid Mine Drainage microbial communities from Richmond mine
429
338
-
Ser
CGA
[ENA]
Identical group No.50707 (2 seq.)
>W141085058
AURA01000231
Nitrospirota
Leptospirillum sp. Group IV 'UBA BS' [AURA]
907
996
+
Ser
CGA
[ENA]
¡û
>ENV09002049
ACXJ01008066
Mine drainage metagenome Contig1
457
368
-
Ser
CGA
[ENA]
¡û
Identical group No.50708 (1 seq.)
>ENV09002181
ACXJ01010878
Mine drainage metagenome Contig1
5901
5812
-
Pseudo
CGA
[ENA]
¡û
Identical group No.158042 (3 seq.)
>W141000129
AADL01001787
Unclassified
mine drainage metagenome Group III [AADL]
2243
2159
-
Ser
CGA
[ENA]
¡û
>ENV09002194
ACXJ01011058
Mine drainage metagenome Contig1
2993
2909
-
Ser
CGA
[ENA]
¡û
>WENV077137
AADL01001787
Acid Mine Drainage microbial communities from Richmond mine
2243
2156
-
Ser
CGA
[ENA]
Identical group No.158341 (1 seq.)
>ENV09002008
ACXJ01006233
Mine drainage metagenome Contig1
593
511
-
Ser
CGA
[ENA]
¡û
Identical group No.158342 (2 seq.)
>WENV170013435
AUZX01005532
[AUZX] mine drainage metagenome; uppermost (B1A) sediment-attached strata from acid streamer/mats thriving at Los Rueldos
1067
983
-
Ser
CGA
[ENA]
¢þ
>ENV09002085
ACXJ01009298
Mine drainage metagenome Contig1
2069
2153
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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