This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Nitrososphaerota
Anticodon = CAA
HIT:
20 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.90822 (2 seq.)
>A179000637
CP012850
Nitrososphaerota
Candidatus Nitrosocosmicus oleophilus MY3 [CP012850]
2023766
2023669
-
Leu
CAA
-
¡û
>A179000675
CP017922
Nitrososphaerota
Candidatus Nitrosocosmicus hydrocola G61 [CP017922]
2008614
2008712
+
Leu
CAA
-
¡û
Identical group No.95736 (2 seq.)
>A179000400
CP003842
Nitrososphaerota
Candidatus Nitrosopumilus koreensis AR1 [CP003842]
453933
454033
+
Leu
CAA
-
¡û
>A179000565
CP010868
Nitrososphaerota
Nitrosopumilus piranensis D3C [CP010868]
1403895
1403795
-
Leu
CAA
-
¡û
Identical group No.103461 (1 seq.)
>A178000422
CP007174
Nitrososphaerota
Candidatus Nitrososphaera evergladensis SR1 [CP007174]
1914935
1915088
+
Leu
CAA
-
¡û
Identical group No.103463 (1 seq.)
>A179000406
CP003843
Nitrososphaerota
Candidatus Nitrosopumilus sediminis AR2 [CP003843]
427634
427734
+
Leu
CAA
-
¡û
Identical group No.104563 (1 seq.)
>A17A001472
CP012850
Nitrososphaerota
Candidatus Nitrosocosmicus oleophilus MY3 [CP012850]
2023766
2023669
-
Leu
CAA
-
¡û
Identical group No.104568 (1 seq.)
>A179000724
LN890280
Nitrososphaerota
Candidatus Nitrosotalea devanaterra [LN890280]
428490
428392
-
Leu
CAA
-
¡û
Identical group No.107071 (1 seq.)
>A178000183
CP002408
Nitrososphaerota
Candidatus Nitrososphaera gargensis Ga9.2 [CP002408]
1781709
1781858
+
Leu
CAA
-
¡û
Identical group No.107072 (1 seq.)
>A178000411
CP007026
Nitrososphaerota
Candidatus Nitrosopelagicus brevis CN25 [CP007026]
374958
375058
+
Leu
CAA
-
¡û
Identical group No.108984 (1 seq.)
>A178000436
CP007536
Nitrososphaerota
Nitrososphaera viennensis EN76 [CP007536]
825138
825289
+
Leu
CAA
-
¡û
Identical group No.108985 (1 seq.)
>A179000588
CP011070
Nitrososphaerota
Nitrosopumilus adriaticus NF5 [CP011070]
1350339
1350239
-
Leu
CAA
-
¡û
Identical group No.108986 (1 seq.)
>A179000695
CP021324
Nitrososphaerota
Candidatus Nitrosomarinus catalina SPOT01 [CP021324]
924526
924424
-
Leu
CAA
-
¡û
Identical group No.110640 (1 seq.)
>A179000593
CP011097
Nitrososphaerota
Candidatus Nitrosotenuis cloacae SAT1 [CP011097]
1160254
1160154
-
Leu
CAA
-
¡û
Identical group No.110845 (1 seq.)
>At0067
DP000238
Nitrososphaerota
Cenarchaeum symbiosum [DP000238]
1422229
1422329
+
Leu
CAA
[Ensembl]
¡û
Identical group No.111573 (1 seq.)
>A179000017
CP000866
Nitrososphaerota
Nitrosopumilus maritimus SCM1 [CP000866]
454316
454416
+
Leu
CAA
-
¡û
Identical group No.231229 (1 seq.)
>A17A000961
CP003843
Nitrososphaerota
Candidatus Nitrosopumilus sediminis AR2 [CP003843]
427634
427735
+
Leu
CAA
-
¡û
Identical group No.231385 (1 seq.)
>A17A001823
LN890280
Nitrososphaerota
Candidatus Nitrosotalea devanaterra [LN890280]
428491
428391
-
Leu
CAA
-
¡û
Identical group No.232051 (1 seq.)
>A17A001353
CP011070
Nitrososphaerota
Nitrosopumilus adriaticus NF5 [CP011070]
1350340
1350238
-
Leu
CAA
-
¡û
Identical group No.232052 (1 seq.)
>A17A001685
CP021324
Nitrososphaerota
Candidatus Nitrosomarinus catalina SPOT01 [CP021324]
924526
924423
-
Leu
CAA
-
¡û
Identical group No.232215 (1 seq.)
>A17A001359
CP011097
Nitrososphaerota
Candidatus Nitrosotenuis cloacae SAT1 [CP011097]
1160254
1160153
-
Leu
CAA
-
¡û
Identical group No.232363 (1 seq.)
>A17A000049
CP000866
Nitrososphaerota
Nitrosopumilus maritimus SCM1 [CP000866]
454316
454417
+
Leu
CAA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK