tRNA genes clustered and arranged according to each identical group

Nitrososphaerota

Anticodon = CGC

HIT: 10 Group(s).
Download Sequence Representative sequence of each cluster
View ClustalW result
Sort by Identical group No. Sort by the number of tRNAs in the Identical group
Select
 Sequence ID Genome ID
(or Accession No.)		 Phylum/Class
(Sample source for ENV)		 Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.244865 (1 seq.)
>A171006843 CP017922 Nitrososphaerota Candidatus Nitrosocosmicus hydrocola G61 [CP017922] 1315042 1314968 - Ala CGC - ¡û
Identical group No.261125 (1 seq.)
>A171006389 CP012850 Nitrososphaerota Candidatus Nitrosocosmicus oleophilus MY3 [CP012850] 2884340 2884415 + Ala CGC - ¡û
Identical group No.494107 (5 seq.)
>A171001914 CP002408 Nitrososphaerota Candidatus Nitrososphaera gargensis Ga9.2 [CP002408] 1067939 1067866 - Ala CGC - ¡û
>A171004252 CP007174 Nitrososphaerota Candidatus Nitrososphaera evergladensis SR1 [CP007174] 1248064 1248136 + Ala CGC - ¡û
>A171004324 CP007536 Nitrososphaerota Nitrososphaera viennensis EN76 [CP007536] 156878 156950 + Ala CGC - ¡û
>WENV180690237 OCZS010001020 [OCZS] soil metagenome; soil 1074 1002 - Ala CGC [ENA] ¢þ
>WENV181164302 OEIR01104958 [OEIR] soil metagenome; soil 226 299 + Ala CGC [ENA] ¢þ
Identical group No.594132 (1 seq.)
>A171007489 LN890280 Nitrososphaerota Candidatus Nitrosotalea devanaterra [LN890280] 179766 179691 - Ala CGC - ¡û
Identical group No.661700 (21 seq.)
>A171007059 CP021324 Nitrososphaerota Candidatus Nitrosomarinus catalina SPOT01 [CP021324] 1190090 1190161 + Ala CGC - ¡û
>WENV180115518 OAPT01005268 [OAPT] marine metagenome; seawater 474 403 - Ala CGC [ENA] ¢þ
>WENV180360416 OBNT01088723 [OBNT] marine metagenome; Sea Water 117 46 - Ala CGC [ENA] ¢þ
>WENV181092420 OEBK01000538 [OEBK] marine metagenome; ENVO:00002010 for 'seawater 1435 1506 + Ala CGC [ENA] ¢þ
>WENV170112741 CENF01003664 [CENF] marine metagenome genome assembly TARA_004_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 787 858 + Ala CGC [ENA] ¢þ
>WENV170122499 CENN01081146 [CENN] marine metagenome genome assembly TARA_023_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 456 385 - Ala CGC [ENA] ¢þ
>WENV170145231 CENY01289706 [CENY] marine metagenome genome assembly TARA_032_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 205 276 + Ala CGC [ENA] ¢þ
>WENV170148249 CENZ01283042 [CENZ] marine metagenome genome assembly TARA_025_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 63 134 + Ala CGC [ENA] ¢þ
>WENV170155133 CEOF01438258 [CEOF] marine metagenome genome assembly TARA_018_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 600 671 + Ala CGC [ENA] ¢þ
>WENV170241461 CEQN01295769 [CEQN] marine metagenome genome assembly TARA_078_DCM_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 581 510 - Ala CGC [ENA] ¢þ
>WENV170271854 CERK01013482 [CERK] marine metagenome genome assembly TARA_066_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 299 370 + Ala CGC [ENA] ¢þ
>WENV170282591 CERS01200430 [CERS] marine metagenome genome assembly TARA_068_SRF_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 232 161 - Ala CGC [ENA] ¢þ
>WENV170285663 CERW01008581 [CERW] marine metagenome genome assembly TARA_066_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 345 274 - Ala CGC [ENA] ¢þ
>WENV170287456 CERX01019764 [CERX] marine metagenome genome assembly TARA_068_DCM_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 132 203 + Ala CGC [ENA] ¢þ
>WENV170325139 CESS01200059 [CESS] marine metagenome genome assembly TARA_023_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1960 1889 - Ala CGC [ENA] ¢þ
>WENV170475219 CEVH01286680 [CEVH] marine metagenome genome assembly TARA_141_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 619 548 - Ala CGC [ENA] ¢þ
>WENV170504723 CEVV01375822 [CEVV] marine metagenome genome assembly TARA_152_MIX_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1673 1602 - Ala CGC [ENA] ¢þ
>WENV170506077 CEVW01131380 [CEVW] marine metagenome genome assembly TARA_149_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 9 80 + Ala CGC [ENA] ¢þ
>WENV170508953 CEVX01313438 [CEVX] marine metagenome genome assembly TARA_152_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 420 349 - Ala CGC [ENA] ¢þ
>WENV170617137 FUWD012915098 [FUWD] metagenome; unknown 2 73 + Ala CGC [ENA] ¢þ
>WENV170750130 LUMG01000392 [LUMG] marine metagenome; Red Sea water column Station 34 - depth 50m 1987 1916 - Ala CGC [ENA] ¢þ
Identical group No.669636 (18 seq.)
>A171004106 CP007026 Nitrososphaerota Candidatus Nitrosopelagicus brevis CN25 [CP007026] 1016551 1016622 + Ala CGC - ¡û
>WENV170147254 CENZ01125944 [CENZ] marine metagenome genome assembly TARA_025_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 514 585 + Ala CGC [ENA] ¢þ
>WENV170154275 CEOF01189434 [CEOF] marine metagenome genome assembly TARA_018_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 697 626 - Ala CGC [ENA] ¢þ
>WENV170247005 CEQQ01009924 [CEQQ] marine metagenome genome assembly TARA_076_DCM_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 403 474 + Ala CGC [ENA] ¢þ
>WENV170256137 CEQX01053842 [CEQX] marine metagenome genome assembly TARA_070_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 544 615 + Ala CGC [ENA] ¢þ
>WENV170259976 CEQY01339496 [CEQY] marine metagenome genome assembly TARA_070_SRF_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 343 272 - Ala CGC [ENA] ¢þ
>WENV170260975 CERB01029595 [CERB] marine metagenome genome assembly TARA_072_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 91 20 - Ala CGC [ENA] ¢þ
>WENV170272492 CERK01115361 [CERK] marine metagenome genome assembly TARA_066_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 343 272 - Ala CGC [ENA] ¢þ
>WENV170280511 CERR01141404 [CERR] marine metagenome genome assembly TARA_068_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 343 272 - Ala CGC [ENA] ¢þ
>WENV170284793 CERV01087004 [CERV] marine metagenome genome assembly TARA_068_DCM_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 537 466 - Ala CGC [ENA] ¢þ
>WENV170287034 CERW01241434 [CERW] marine metagenome genome assembly TARA_066_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 343 272 - Ala CGC [ENA] ¢þ
>WENV170323857 CESS01031251 [CESS] marine metagenome genome assembly TARA_023_DCM_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 410 481 + Ala CGC [ENA] ¢þ
>WENV170498031 CEVS01393456 [CEVS] marine metagenome genome assembly TARA_151_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 2008 1937 - Ala CGC [ENA] ¢þ
>WENV170516468 CEWB01123202 [CEWB] marine metagenome genome assembly TARA_068_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 343 272 - Ala CGC [ENA] ¢þ
>WENV170730137 LULG01015213 [LULG] marine metagenome; Red Sea water column Station 169 - depth 200m 753 682 - Ala CGC [ENA] ¢þ
>WENV170761040 LUMU01005259 [LUMU] marine metagenome; Red Sea water column Station 192 - depth 100m 1650 1579 - Ala CGC [ENA] ¢þ
>WENV170761597 LUMV01002462 [LUMV] marine metagenome; Red Sea water column Station 192 - depth 200m 257 328 + Ala CGC [ENA] ¢þ
>W1910647528 LXWN01000001 Nitrososphaerota Candidatus Nitrosopelagicus brevis brevis U25 [LXWN] 672958 673029 + Ala CGC [ENA] ¡û
Identical group No.673078 (16 seq.)
>A171000230 CP000866 Nitrososphaerota Nitrosopumilus maritimus SCM1 [CP000866] 188725 188797 + Ala CGC - ¡û
>A171003388 CP003842 Nitrososphaerota Candidatus Nitrosopumilus koreensis AR1 [CP003842] 156179 156251 + Ala CGC - ¡û
>A171005910 CP010868 Nitrososphaerota Nitrosopumilus piranensis D3C [CP010868] 501747 501819 + Ala CGC - ¡û
>WENV170537977 CEWR01042564 [CEWR] marine metagenome genome assembly TARA_085_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 187 259 + Ala CGC [ENA] ¢þ
>WENV170701498 LKGT01009822 [LKGT] marine sediment metagenome; sediment sample collected at the water-sediment interface from the South Pacific gyre, IODP 4658 4586 - Ala CGC [ENA] ¢þ
>WENV170701673 LKGT01012564 [LKGT] marine sediment metagenome; sediment sample collected at the water-sediment interface from the South Pacific gyre, IODP 1245 1173 - Ala CGC [ENA] ¢þ
>W1910572976 JNVL01000054 Nitrososphaerota Marine Group I thaumarchaeote SCGC AAA799-E16 [JNVL] 2249 2321 + Ala CGC [ENA] ¡û
>W1910573204 JOSY01000006 Nitrososphaerota Marine Group I thaumarchaeote SCGC AAA799-D11 [JOSY] 11562 11634 + Ala CGC [ENA] ¡û
>W1910573241 JOSZ01000026 Nitrososphaerota Marine Group I thaumarchaeote SCGC AAA799-P11 [JOSZ] 7040 7112 + Ala CGC [ENA] ¡û
>W1910573260 JOTA01000035 Nitrososphaerota Marine Group I thaumarchaeote SCGC AAA799-B03 [JOTA] 3511 3439 - Ala CGC [ENA] ¡û
>W1910573294 JOTD01000033 Nitrososphaerota Marine Group I thaumarchaeote SCGC RSA3 [JOTD] 7447 7519 + Ala CGC [ENA] ¡û
>W1610000535 ABEO01000001 Nitrososphaerota Nitrosopumilus maritimus maritimus SCM1 [ABEO] 1094601 1094673 + Ala CGC [ENA] ¡û
>W1610005403 AJVI01000005 Nitrososphaerota Nitrosopumilus sp. SJ [AJVI] 143872 143944 + Ala CGC [ENA] ¡û
>W1610005428 AJVJ01000015 Nitrososphaerota Nitrosopumilus sp. AR [AJVJ] 94578 94650 + Ala CGC [ENA] ¡û
>W1610029897 AXWL01000004 Nitrososphaerota Thaumarchaeota archaeon SCGC AAA282-K18 [AXWL] 53758 53686 - Ala CGC [ENA] ¡û
>WENV068891 AACY023742828 Marine microbial communities from Global Ocean Sampling (GOS) 693 767 + Ala CGC [ENA]
Identical group No.720472 (3 seq.)
>A171006022 CP011070 Nitrososphaerota Nitrosopumilus adriaticus NF5 [CP011070] 1652602 1652676 + Ala CGC - ¡û
>W1910126243 BGKI01000012 Nitrososphaerota Nitrosopumilus zosterae sp. NM25 [BGKI] 15459 15533 + Ala CGC [ENA] ¡û
>W1610617249 LGTD01000387 Nitrososphaerota Candidatus Nitrosopumilus sp. DDS1 [LGTD] 1518 1444 - Ala CGC [ENA] ¡û
Identical group No.725567 (2 seq.)
>A171006062 CP011097 Nitrososphaerota Candidatus Nitrosotenuis cloacae SAT1 [CP011097] 296981 296909 - Ala CGC - ¡û
>WENV170566561 FKKE01049073 [FKKE] freshwater metagenome; freshwater 557 483 - Ala CGC [ENA] ¢þ
Identical group No.739208 (6 seq.)
>At0075 DP000238 Nitrososphaerota Cenarchaeum symbiosum [DP000238] 21853 21779 - Ala CGC [Ensembl] ¡û
>ENV004143 DQ397542 Environmental sample from ENV division of INSDC 10864 10938 + Ala CGC [ENA]
>ENV004184 DQ397601 Environmental sample from ENV division of INSDC 21903 21977 + Ala CGC [ENA]
>ENV004197 DQ397630 Environmental sample from ENV division of INSDC 1152 1226 + Ala CGC [ENA]
>ENV004233 DQ397856 Environmental sample from ENV division of INSDC 26066 25992 - Ala CGC [ENA]
>ENV004247 DQ397872 Environmental sample from ENV division of INSDC 29397 29323 - Ala CGC [ENA]
Select
 Sequence ID Genome ID
(or Accession No.)		 Phylum/Class
(Sample source for ENV)		 Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

BACK