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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Oral TM7b microbial communities of Human
Anticodon = CAT
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.286949 (43 seq.)
>w027310
ABBW01000049
Unclassified
candidate division TM7 single-cell isolate TM7b TM7 isolate TM7b [ABBW]
1027
1105
+
Met
CAT
[ENA]
¡û
>WENV180726749
ODGU01000422
[ODGU] human metagenome; G_DNA_Supragingival plaque
15923
15999
+
Met
CAT
[ENA]
¢þ
>WENV180750119
ODHS01000498
[ODHS] human metagenome; G_DNA_Supragingival plaque
14419
14495
+
Met
CAT
[ENA]
¢þ
>WENV180764837
ODIB01002099
[ODIB] human metagenome; G_DNA_Supragingival plaque
1911
1835
-
Met
CAT
[ENA]
¢þ
>WENV180778689
ODIM01040209
[ODIM] human metagenome; G_DNA_Supragingival plaque
294
370
+
Met
CAT
[ENA]
¢þ
>WENV180787397
ODIS01005106
[ODIS] human metagenome; G_DNA_Supragingival plaque
3367
3443
+
Met
CAT
[ENA]
¢þ
>WENV180795279
ODIZ01082574
[ODIZ] human metagenome; G_DNA_Tongue dorsum
82
6
-
Met
CAT
[ENA]
¢þ
>WENV180796059
ODJB01001175
[ODJB] human metagenome; G_DNA_Supragingival plaque
14562
14486
-
Met
CAT
[ENA]
¢þ
>WENV180800617
ODJD01000268
[ODJD] human metagenome; G_DNA_Supragingival plaque
14888
14964
+
Met
CAT
[ENA]
¢þ
>WENV180804044
ODJG01000381
[ODJG] human metagenome; G_DNA_Supragingival plaque
28148
28072
-
Met
CAT
[ENA]
¢þ
>WENV180808468
ODJK01000088
[ODJK] human metagenome; G_DNA_Subgingival plaque
27977
27901
-
Met
CAT
[ENA]
¢þ
>WENV180813032
ODJO01000013
[ODJO] human metagenome; G_DNA_Supragingival plaque
245310
245386
+
Met
CAT
[ENA]
¢þ
>WENV180823951
ODJX01000031
[ODJX] human metagenome; G_DNA_Supragingival plaque
56797
56721
-
Met
CAT
[ENA]
¢þ
>WENV180847153
ODKT01046819
[ODKT] human metagenome; G_DNA_Supragingival plaque
202
278
+
Met
CAT
[ENA]
¢þ
>WENV180859504
ODLD01000998
[ODLD] human metagenome; G_DNA_Supragingival plaque
255
331
+
Met
CAT
[ENA]
¢þ
>WENV180888125
ODMN01000076
[ODMN] human metagenome; G_DNA_Supragingival plaque
14419
14495
+
Met
CAT
[ENA]
¢þ
>WENV180921923
ODTJ01000705
[ODTJ] human metagenome; G_DNA_Supragingival plaque
15448
15524
+
Met
CAT
[ENA]
¢þ
>WENV180923939
ODTK01000417
[ODTK] human metagenome; G_DNA_Supragingival plaque
9873
9797
-
Met
CAT
[ENA]
¢þ
>WENV180937676
ODTX01000024
[ODTX] human metagenome; G_DNA_Supragingival plaque
135471
135547
+
Met
CAT
[ENA]
¢þ
>WENV180943766
ODUC01002405
[ODUC] human metagenome; G_DNA_Supragingival plaque
301
377
+
Met
CAT
[ENA]
¢þ
>WENV180980553
ODVE01000501
[ODVE] human metagenome; G_DNA_Supragingival plaque
8530
8454
-
Met
CAT
[ENA]
¢þ
>WENV180982475
ODVF01000031
[ODVF] human metagenome; G_DNA_Supragingival plaque
78660
78584
-
Met
CAT
[ENA]
¢þ
>WENV180987732
ODVK01098400
[ODVK] human metagenome; G_DNA_Supragingival plaque
205
281
+
Met
CAT
[ENA]
¢þ
>WENV180998063
ODVT01000006
[ODVT] human metagenome; G_DNA_Buccal mucosa
246738
246662
-
Met
CAT
[ENA]
¢þ
>WENV181002523
ODVX01000565
[ODVX] human metagenome; G_DNA_Supragingival plaque
15995
16071
+
Met
CAT
[ENA]
¢þ
>WENV181007696
ODWE01000478
[ODWE] human metagenome; G_DNA_Supragingival plaque
14514
14590
+
Met
CAT
[ENA]
¢þ
>WENV181043291
ODXU01103161
[ODXU] human metagenome; G_DNA_Buccal mucosa
41
117
+
Met
CAT
[ENA]
¢þ
>WENV181062994
ODYP01000021
[ODYP] human metagenome; G_DNA_Supragingival plaque
149072
149148
+
Met
CAT
[ENA]
¢þ
>WENV181066436
ODZI01000034
[ODZI] human metagenome; G_DNA_Supragingival plaque
13542
13466
-
Met
CAT
[ENA]
¢þ
>WENV181076081
OEAP01001607
[OEAP] human metagenome; G_DNA_Supragingival plaque
2717
2793
+
Met
CAT
[ENA]
¢þ
>WENV181078789
OEAS01000531
[OEAS] human metagenome; G_DNA_Supragingival plaque
10047
9971
-
Met
CAT
[ENA]
¢þ
>WENV181084107
OEAV01065508
[OEAV] human metagenome; G_DNA_Supragingival plaque
284
208
-
Met
CAT
[ENA]
¢þ
>WENV181106585
OEEI01000002
[OEEI] human metagenome; G_DNA_Supragingival plaque
22573
22497
-
Met
CAT
[ENA]
¢þ
>WENV181121269
OEFL01001983
[OEFL] human metagenome; G_DNA_Supragingival plaque
268
344
+
Met
CAT
[ENA]
¢þ
>WENV181145947
OEHQ01000278
[OEHQ] human metagenome; G_DNA_Supragingival plaque
20172
20248
+
Met
CAT
[ENA]
¢þ
>WENV181152105
OEIA01000105
[OEIA] human metagenome; G_DNA_Supragingival plaque
14722
14646
-
Met
CAT
[ENA]
¢þ
>WENV181178208
OEJS01093233
[OEJS] human metagenome; G_DNA_Supragingival plaque
161
85
-
Met
CAT
[ENA]
¢þ
>WENV170379911
CETV01253192
[CETV] marine metagenome genome assembly TARA_133_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
862
786
-
Met
CAT
[ENA]
¢þ
>WENV170415187
CEUL01022481
[CEUL] marine metagenome genome assembly TARA_124_MIX_0.22-0.45 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
419
495
+
Met
CAT
[ENA]
¢þ
>WENV170463725
CEVD01169854
[CEVD] marine metagenome genome assembly TARA_123_MIX_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
436
512
+
Met
CAT
[ENA]
¢þ
>WENV170482424
CEVM01029067
[CEVM] marine metagenome genome assembly TARA_145_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
971
895
-
Met
CAT
[ENA]
¢þ
>WENV170723142
LSQX01256541
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
134221
134297
+
Met
CAT
[ENA]
¢þ
>WENV080321
ABBW01000049
Oral TM7b microbial communities of Human
1027
1105
+
Met
CAT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK