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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Rhodophyta
Anticodon = GCT
HIT:
60 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.6166 (3 seq.)
>WENV181406148
OGCG01000007
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
62600
62692
+
Ser
GCT
[ENA]
¢þ
>CHL090100056
AB002583
Rhodophyta
Cyanidioschyzon merolae
85365
85273
-
Ser
GCT
[ENA]
¡û
>CHL090101438
AY286123
Rhodophyta
Cyanidioschyzon merolae strain DBV201
129986
130078
+
Ser
GCT
[ENA]
¡û
Identical group No.7363 (1 seq.)
>CHL090100243
AF022186
Rhodophyta
Cyanidium caldarium
68842
68933
+
Ser
GCT
[ENA]
¡û
Identical group No.9521 (1 seq.)
>CHL1810006815
KC153978
Rhodophyta
Calliarthron tuberculosum (KC153978)
57853
57943
+
Ser
GCT
[ENA]
¡û
Identical group No.10943 (1 seq.)
>CHL1810038787
KY033529
Rhodophyta
Sheathia arcuata (KY033529)
63674
63766
+
Ser
GCT
[ENA]
¡û
Identical group No.11356 (1 seq.)
>CHL1810039430
KY083067
Rhodophyta
Compsopogon caeruleus (KY083067)
52905
52995
+
Ser
GCT
[ENA]
¡û
Identical group No.11654 (1 seq.)
>CHL1810000567
AP012987
Rhodophyta
Porphyridium purpureum (AP012987)
19559
19469
-
Ser
GCT
[ENA]
¡û
Identical group No.17456 (1 seq.)
>CHL1810060921
MH396013
Rhodophyta
Gracilaria vermiculophylla (MH396013)
148746
148657
-
Ser
GCT
[ENA]
¡û
Identical group No.18145 (1 seq.)
>CHL1810024545
KU179794
Rhodophyta
Gracilariopsis lemaneiformis (KU179794)
120663
120574
-
Ser
GCT
[ENA]
¡û
Identical group No.21258 (1 seq.)
>CHL1810011904
KJ513670
Rhodophyta
Membranoptera weeksiae (KJ513670)
58901
58989
+
Ser
GCT
[ENA]
¡û
Identical group No.21265 (1 seq.)
>CHL1810049895
MF101415
Rhodophyta
Osmundaria fimbriata (MF101415)
149657
149569
-
Ser
GCT
[ENA]
¡û
Identical group No.21266 (1 seq.)
>CHL1810050140
MF101425
Rhodophyta
Polysiphonia brodiei (MF101425)
139352
139264
-
Ser
GCT
[ENA]
¡û
Identical group No.22430 (1 seq.)
>CHL1810045138
KY709208
Rhodophyta
Boldia erythrosiphon UTEX LB2858 (KY709208)
30831
30919
+
Ser
GCT
[ENA]
¡û
Identical group No.22431 (1 seq.)
>CHL1810050242
MF101430
Rhodophyta
Bryothamnion seaforthii (MF101430)
147508
147419
-
Ser
GCT
[ENA]
¡û
Identical group No.22432 (1 seq.)
>CHL1810050365
MF101437
Rhodophyta
Melanothamnus harveyi (MF101437)
137456
137368
-
Ser
GCT
[ENA]
¡û
Identical group No.22706 (1 seq.)
>CHL090103176
U38804
Rhodophyta
Porphyra purpurea
116557
116468
-
Ser
GCT
[ENA]
¡û
Identical group No.23385 (1 seq.)
>CHL1810050016
MF101420
Rhodophyta
Symphyocladia dendroidea (MF101420)
141911
141823
-
Ser
GCT
[ENA]
¡û
Identical group No.23386 (1 seq.)
>CHL1810050317
MF101434
Rhodophyta
Herposiphonia versicolor (MF101434)
138953
138865
-
Ser
GCT
[ENA]
¡û
Identical group No.23387 (1 seq.)
>CHL1810050518
MF101443
Rhodophyta
Dasyclonium flaccidum (MF101443)
142035
141947
-
Ser
GCT
[ENA]
¡û
Identical group No.24068 (1 seq.)
>CHL1810050089
MF101423
Rhodophyta
Polysiphonia sertularioides (MF101423)
138456
138366
-
Ser
GCT
[ENA]
¡û
Identical group No.24069 (1 seq.)
>CHL1810050416
MF101439
Rhodophyta
Vertebrata australis (MF101439)
139568
139478
-
Ser
GCT
[ENA]
¡û
Identical group No.25388 (1 seq.)
>CHL1810050165
MF101426
Rhodophyta
Vertebrata thuyoides (MF101426)
139394
139306
-
Ser
GCT
[ENA]
¡û
Identical group No.25389 (1 seq.)
>CHL1810050442
MF101440
Rhodophyta
Ophidocladus simpliciusculus (MF101440)
140461
140373
-
Ser
GCT
[ENA]
¡û
Identical group No.25905 (1 seq.)
>CHL1810050292
MF101433
Rhodophyta
Vertebrata isogona (MF101433)
139608
139520
-
Ser
GCT
[ENA]
¡û
Identical group No.25906 (1 seq.)
>CHL1810050618
MF101447
Rhodophyta
Thaumatella adunca (MF101447)
141616
141528
-
Ser
GCT
[ENA]
¡û
Identical group No.25907 (1 seq.)
>CHL1810050744
MF101454
Rhodophyta
Polysiphonia schneideri (MF101454)
136420
136330
-
Ser
GCT
[ENA]
¡û
Identical group No.26418 (1 seq.)
>CHL1810027994
KU892652
Rhodophyta
Kappaphycus alvarezii (KU892652)
57798
57886
+
Ser
GCT
[ENA]
¡û
Identical group No.26421 (1 seq.)
>CHL1810049767
MF101408
Rhodophyta
Dipterocladia arabiensis (MF101408)
140872
140784
-
Ser
GCT
[ENA]
¡û
Identical group No.26422 (1 seq.)
>CHL1810049869
MF101413
Rhodophyta
Periphykon beckeri (MF101413)
140513
140423
-
Ser
GCT
[ENA]
¡û
Identical group No.26679 (1 seq.)
>CHL090100884
AP006715
Rhodophyta
Porphyra yezoensis
117280
117192
-
Ser
GCT
[ENA]
¡û
Identical group No.26975 (1 seq.)
>CHL1810049817
MF101410
Rhodophyta
Laurenciella marilzae (MF101410)
143600
143512
-
Ser
GCT
[ENA]
¡û
Identical group No.26976 (2 seq.)
>CHL1810050216
MF101428
Rhodophyta
Polysiphonia stricta (MF101428)
141052
140964
-
Ser
GCT
[ENA]
¡û
>CHL1810050543
MF101444
Rhodophyta
Dipterosiphonia australica (MF101444)
139951
139863
-
Ser
GCT
[ENA]
¡û
Identical group No.26977 (1 seq.)
>CHL1810050796
MF101465
Rhodophyta
Digenea simplex (MF101465)
146664
146576
-
Ser
GCT
[ENA]
¡û
Identical group No.26978 (1 seq.)
>CHL1810050821
MF101467
Rhodophyta
Tolypiocladia glomerulata (MF101467)
138317
138227
-
Ser
GCT
[ENA]
¡û
Identical group No.27514 (1 seq.)
>CHL1810049842
MF101411
Rhodophyta
Acrosorium ciliolatum (MF101411)
147469
147381
-
Ser
GCT
[ENA]
¡û
Identical group No.27515 (1 seq.)
>CHL1810050041
MF101421
Rhodophyta
Bostrychia simpliciuscula (MF101421)
139455
139365
-
Ser
GCT
[ENA]
¡û
Identical group No.28005 (1 seq.)
>CHL1810008226
KC464603
Rhodophyta
Pyropia haitanensis (KC464603)
118295
118207
-
Ser
GCT
[ENA]
¡û
Identical group No.28439 (1 seq.)
>CHL1810050267
MF101432
Rhodophyta
Polysiphonia infestans (MF101432)
137820
137732
-
Ser
GCT
[ENA]
¡û
Identical group No.28440 (1 seq.)
>CHL1810050669
MF101449
Rhodophyta
Kuetzingia canaliculata (MF101449)
147943
147855
-
Ser
GCT
[ENA]
¡û
Identical group No.28890 (1 seq.)
>CHL1810050568
MF101445
Rhodophyta
Sonderella linearis (MF101445)
141768
141680
-
Ser
GCT
[ENA]
¡û
Identical group No.29568 (1 seq.)
>CHL1810049791
MF101409
Rhodophyta
Platysiphonia delicata (MF101409)
143031
142943
-
Ser
GCT
[ENA]
¡û
Identical group No.29569 (1 seq.)
>CHL1810050190
MF101427
Rhodophyta
Polysiphonia elongata (MF101427)
139878
139790
-
Ser
GCT
[ENA]
¡û
Identical group No.29570 (1 seq.)
>CHL1810050593
MF101446
Rhodophyta
Gredgaria maugeana (MF101446)
140151
140063
-
Ser
GCT
[ENA]
¡û
Identical group No.29571 (1 seq.)
>CHL1810050770
MF101455
Rhodophyta
Dictyomenia sonderi (MF101455)
141019
140931
-
Ser
GCT
[ENA]
¡û
Identical group No.29935 (1 seq.)
>CHL1810049990
MF101419
Rhodophyta
Bostrychia moritziana (MF101419)
141341
141251
-
Ser
GCT
[ENA]
¡û
Identical group No.29936 (1 seq.)
>CHL1810050719
MF101452
Rhodophyta
Taenioma perpusillum (MF101452)
136146
136058
-
Ser
GCT
[ENA]
¡û
Identical group No.30235 (1 seq.)
>CHL1810050115
MF101424
Rhodophyta
Rhodomela confervoides (MF101424)
146466
146378
-
Ser
GCT
[ENA]
¡û
Identical group No.30236 (1 seq.)
>CHL1810050391
MF101438
Rhodophyta
Polysiphonia scopulorum (MF101438)
140228
140140
-
Ser
GCT
[ENA]
¡û
Identical group No.32645 (2 seq.)
>CHL1810049918
MF101416
Rhodophyta
Caloglossa monosticha (MF101416)
137227
137138
-
Ser
GCT
[ENA]
¡û
>CHL1810049965
MF101418
Rhodophyta
Caloglossa intermedia (MF101418)
137769
137680
-
Ser
GCT
[ENA]
¡û
Identical group No.36881 (1 seq.)
>CHL1810050065
MF101422
Rhodophyta
Caloglossa beccarii (MF101422)
137454
137365
-
Ser
GCT
[ENA]
¡û
Identical group No.36882 (1 seq.)
>CHL1810050695
MF101450
Rhodophyta
Cliftonaea pectinata (MF101450)
145820
145733
-
Ser
GCT
[ENA]
¡û
Identical group No.36888 (1 seq.)
>CHL1810058642
MG598531
Rhodophyta
Grateloupia filicina (MG598531)
102101
102188
+
Ser
GCT
[ENA]
¡û
Identical group No.37856 (1 seq.)
>CHL1810049943
MF101417
Rhodophyta
Bostrychia tenella (MF101417)
142504
142415
-
Ser
GCT
[ENA]
¡û
Identical group No.38862 (1 seq.)
>CHL1810050493
MF101442
Rhodophyta
Thuretia quercifolia (MF101442)
144796
144709
-
Ser
GCT
[ENA]
¡û
Identical group No.40431 (1 seq.)
>CHL1810050644
MF101448
Rhodophyta
Lophocladia kuetzingii (MF101448)
147234
147147
-
Ser
GCT
[ENA]
¡û
Identical group No.41196 (1 seq.)
>CHL1810038742
KY018922
Rhodophyta
Gracilaria changii (KY018922)
125425
125338
-
Ser
GCT
[ENA]
¡û
Identical group No.42551 (1 seq.)
>CHL1810050341
MF101436
Rhodophyta
Dasya naccarioides (MF101436)
142081
141994
-
Ser
GCT
[ENA]
¡û
Identical group No.44757 (1 seq.)
>CHL090101576
AY673996
Rhodophyta
Gracilaria tenuistipitata var. liui
64326
64413
+
Ser
GCT
[ENA]
¡û
Identical group No.45581 (1 seq.)
>CHL1810010849
KF861575
Rhodophyta
Gracilaria salicornia (KF861575)
60693
60780
+
Ser
GCT
[ENA]
¡û
Identical group No.58114 (1 seq.)
>CHL1810045174
KY709209
Rhodophyta
Bulboplastis apyrenoidosa NIES-2742 (KY709209)
594906
594820
-
Ser
GCT
[ENA]
¡û
Identical group No.86817 (1 seq.)
>CHL1810050467
MF101441
Rhodophyta
Spyridia filamentosa (MF101441)
146524
146439
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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